API for puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

Global functions
Clust.exampleE Man page
Clust.exampleStd Man page
Clustii.exampleE Man page
Clustii.exampleStd Man page
DEMethod Man page
DEMethod,DEResult-method Man page
DEMethod<- Man page
DEMethod<-,DEResult,character-method Man page
DEResult Man page
DEResult-class Man page
FC Man page
FC,DEResult-method Man page
FC<- Man page
FC<-,DEResult,matrix-method Man page
PMmmgmos Man page Source code
bcomb Man page Source code
calcAUC Man page Source code
calculateFC Man page Source code
calculateLimma Man page Source code
calculateTtest Man page Source code
class:DEResult Man page
class:exprReslt Man page
class:pumaPCARes Man page
clusterApplyLBDots Man page Source code
clusterNormE Man page Source code
clusterNormVar Man page Source code
compareLimmapumaDE Man page Source code
createContrastMatrix Man page Source code
createDesignMatrix Man page Source code
create_eset_r Man page Source code
erfc Man page Source code
eset_mmgmos Man page
exampleE Man page
exampleStd Man page
exprReslt Man page
exprReslt-class Man page
gmhta Man page Source code
gmoExon Man page Source code
hcomb Man page Source code
hgu95aphis Man page
igmoExon Man page Source code
just.mgmos Man page Source code
just.mmgmos Man page Source code
justmgMOS Man page Source code
justmmgMOS Man page Source code
legend2 Man page Source code
license.puma Man page Source code
matrixDistance Man page Source code
mgmos Man page Source code
mmgmos Man page Source code
newtonStep Man page Source code
normalisation.gs Man page Source code
numFP Man page Source code
numOfFactorsToUse Man page Source code
numTP Man page Source code
numberOfContrasts Man page
numberOfContrasts,DEResult-method Man page
numberOfGenes Man page
numberOfGenes,DEResult-method Man page
numberOfProbesets Man page
numberOfProbesets,DEResult-method Man page
orig_pplr Man page Source code
pLikeValues Man page
pLikeValues,DEResult-method Man page
plot,pumaPCARes,missing-method Man page
plot,pumaPCARes-method Man page
plot-methods Man page
plot.pumaPCARes Man page Source code
plotErrorBars Man page Source code
plotHistTwoClasses Man page Source code
plotROC Man page Source code
plotWhiskers Man page Source code
pplr Man page
pplrUnsorted Man page Source code
prcfifty Man page
prcfifty,exprReslt-method Man page
prcfifty<- Man page
prcfifty<-,exprReslt-method Man page
prcfive Man page
prcfive,exprReslt-method Man page
prcfive<- Man page
prcfive<-,exprReslt-method Man page
prcninfive Man page
prcninfive,exprReslt-method Man page
prcninfive<- Man page
prcninfive<-,exprReslt-method Man page
prcsevfive Man page
prcsevfive,exprReslt-method Man page
prcsevfive<- Man page
prcsevfive<-,exprReslt-method Man page
prctwfive Man page
prctwfive,exprReslt-method Man page
prctwfive<- Man page
prctwfive<-,exprReslt-method Man page
puma Man page
puma-package Man page
pumaClust Man page
pumaClustii Man page
pumaComb Man page Source code
pumaCombImproved Man page Source code
pumaDE Man page Source code
pumaDEUnsorted Man page Source code
pumaFull Man page Source code
pumaNormalize Man page Source code
pumaPCA Man page Source code
pumaPCAEstep Man page Source code
pumaPCAExpectations Man page
pumaPCAExpectations-class Man page
pumaPCALikelihoodBound Man page Source code
pumaPCALikelihoodCheck Man page Source code
pumaPCAModel Man page
pumaPCAModel-class Man page
pumaPCANewtonUpdateLogSigma Man page Source code
pumaPCARemoveRedundancy Man page Source code
pumaPCARes Man page
pumaPCARes-class Man page
pumaPCASigmaGradient Man page Source code
pumaPCASigmaObjective Man page Source code
pumaPCAUpdateCinv Man page Source code
pumaPCAUpdateM Man page Source code
pumaPCAUpdateMu Man page Source code
pumaPCAUpdateW Man page Source code
removeUninformativeFactors Man page Source code
se.exprs Man page
se.exprs,exprReslt-method Man page
se.exprs<- Man page
se.exprs<-,exprReslt-method Man page
show,DEResult-method Man page
show,exprReslt-method Man page
statistic Man page
statistic,DEResult-method Man page
statistic<- Man page
statistic<-,DEResult,matrix-method Man page
statisticDescription Man page
statisticDescription,DEResult-method Man page
statisticDescription<- Man page
statisticDescription<-,DEResult,character-method Man page
topGeneIDs Man page
topGeneIDs,DEResult-method Man page
topGenes Man page
topGenes,DEResult-method Man page
write.reslts Man page
write.reslts,DEResult-method Man page
write.reslts,ExpressionSet-method Man page
write.reslts,exprReslt-method Man page
write.reslts,pumaPCARes-method Man page
puma documentation built on Nov. 1, 2018, 4:28 a.m.