create_eset_r: Create an ExpressionSet from a PPLR matrix
In puma: Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
Description
Usage
Arguments
Value
Author(s)
See Also
View source: R/create_eset_r.R
Description
This is really an internal function called from pumaComb. It is used to create an ExpressionSet object from the output of the bcomb function (which was originally part of the pplr package. Don't worry about it!
Usage
1
2
3
4
5
create_eset_r(
eset
, r
, design.matrix=createDesignMatrix(eset)
)
Arguments
eset
An object of class ExpressionSet. The phenotype information from this is used as the phenotype information of the returned object
r
A data frame with components named 'M1', 'M2', and so on, which represent the mean expression values for condition 1, condition 2, and so on. It also has components named 'Std1', 'Std2', and so on, which represent the standard deviation of the gene expression values for condition 1, condtion 2, and so on. This type of data frame is output by function bcomb and hcomb
design.matrix
A design matrix.
Value
An object of class ExpressionSet.
Author(s)
Richard D. Pearson
See Also
Related methods bcomb, hcomb, pumaComb and pumaCombImproved
puma documentation built on Nov. 8, 2020, 11:08 p.m.
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Description Usage Arguments Value Author(s) See Also
View source: R/create_eset_r.R
Description
This is really an internal function called from pumaComb. It is used to create an ExpressionSet object from the output of the bcomb function (which was originally part of the pplr package. Don't worry about it!
Usage
1 2 3 4 5 | create_eset_r(
eset
, r
, design.matrix=createDesignMatrix(eset)
)
|
Arguments
eset |
An object of class |
r |
A data frame with components named 'M1', 'M2', and so on, which represent the mean expression values for condition 1, condition 2, and so on. It also has components named 'Std1', 'Std2', and so on, which represent the standard deviation of the gene expression values for condition 1, condtion 2, and so on. This type of data frame is output by function |
design.matrix |
A design matrix. |
Value
An object of class ExpressionSet.
Author(s)
Richard D. Pearson
See Also
Related methods bcomb, hcomb, pumaComb and pumaCombImproved
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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