plotWhiskers: Standard errors whiskers plot
In puma: Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
Description
Usage
Arguments
Value
Author(s)
See Also
Description
A plot showing error bars for genes of interest.
Usage
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plotWhiskers(
eset
, comparisons=c(1,2)
, sortMethod = c("logRatio", "PPLR")
, numGenes=50
, xlim
, main = "PUMA Whiskers plot"
, highlightedGenes=NULL
)
Arguments
eset
An object of class ExpressionSet.
comparisons
A 2-element integer vector specifying the columns of data to be compared.
sortMethod
The method used to sort the genes. "logRatio" is fold change. PPLR is Probability of Positive Log Ratio (as determined by the pumaDE method).
numGenes
Integer. Number of probesets to plot.
xlim
The x limits of the plot. See plot.default.
main
A main title for the plot. See plot.default.
highlightedGenes
Row numbers of probesets to highlight with an asterisk.
Value
This function has no return value. The output is the plot created.
Author(s)
Richard D. Pearson
See Also
Related method pumaDE
puma documentation built on Nov. 8, 2020, 11:08 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
A plot showing error bars for genes of interest.
Usage
1 2 3 4 5 6 7 8 9 | plotWhiskers(
eset
, comparisons=c(1,2)
, sortMethod = c("logRatio", "PPLR")
, numGenes=50
, xlim
, main = "PUMA Whiskers plot"
, highlightedGenes=NULL
)
|
Arguments
eset |
An object of class |
comparisons |
A 2-element integer vector specifying the columns of data to be compared. |
sortMethod |
The method used to sort the genes. "logRatio" is fold change. PPLR is Probability of Positive Log Ratio (as determined by the |
numGenes |
Integer. Number of probesets to plot. |
xlim |
The x limits of the plot. See |
main |
A main title for the plot. See |
highlightedGenes |
Row numbers of probesets to highlight with an asterisk. |
Value
This function has no return value. The output is the plot created.
Author(s)
Richard D. Pearson
See Also
Related method pumaDE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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