Files in puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
COPYING
NAMESPACE
DESCRIPTION
build/vignette.rds
src/pumaclustii_c.h
src/ipplr_c.c
src/pplr_c.h
src/gme.c
src/user_eval.c
src/global_constants.h
src/ipplr_c.h
src/pumaclustii_c.c
src/o8fint.h
src/multimgmos.c
src/cregistration.c
src/multimgmos.h
src/pumaclust_c.c
src/newx.c
src/o8gene.h
src/o8comm.h
src/donlp2.c
src/pplr_c.c
src/PMmultimgmoshead.h
src/o8para.h
src/o8fuco.h
src/gmehead.h
src/o8cons.h
src/PMmultimgmos.c
src/pumaclust_c.h
data/exampleStd.rda
data/eset_mmgmos.rda
data/Clustii.exampleStd.RData
data/Clust.exampleStd.RData
data/datalist
data/Clust.exampleE.RData
data/hgu95aphis.rda
data/exampleE.rda
data/Clustii.exampleE.RData
R/plotErrorBars.R
R/gmoExon.R
R/pumaComb.R
R/pumaClust.R
R/justmmgmos.R
R/matrixDistance.R
R/pumaPCAUpdateW.R
R/pumaPCAEstep.R
R/pumaPCASigmaObjective.R
R/pumaPCA.R
R/create_eset_r.R
R/compareLimmapumaDE.R
R/esetFunctions.R
R/PMmmgmos.R
R/justmgmos.R
R/pplr.R
R/hcomb.R
R/pumaFull.R
R/classes.R
R/orig_pplr.R
R/gmhta.R
R/bcomb.R
R/igmoExon.R
R/pumaPCALikelihoodCheck.R
R/calculateLimma.R
R/mmgmos.R
R/pumaPCAUpdateM.R
R/pumaPCASigmaGradient.R
R/pumaPCANewtonUpdateLogSigma.R
R/zzz.R
R/pumaDE.R
R/pumaPCALikelihoodBound.R
R/pumaPCAUpdateMu.R
R/numFP.R
R/pumaPCAUpdateCinv.R
R/pumaPlots.R
R/pumaCombImproved.R
R/mgmos.R
R/pumaPCARemoveRedundancy.R
R/pumaClustii.R
demo/puma.tour.R
demo/00Index
vignettes/puma.bib
vignettes/puma-014.pdf
vignettes/puma.Rnw
vignettes/puma-016.pdf
vignettes/puma-015.eps
vignettes/puma-023.eps
vignettes/changelog.txt
vignettes/puma-016.eps
vignettes/puma-022.pdf
vignettes/puma-014.eps
vignettes/puma-024.pdf
vignettes/puma-023.pdf
vignettes/puma-024.eps
vignettes/puma-015.pdf
vignettes/puma-022.eps
man/justmmgMOS.Rd
man/clusterApplyLBDots.Rd
man/pumaPCARes-class.Rd
man/compareLimmapumaDE.Rd
man/plotWhiskers.Rd
man/pumaNormalize.Rd
man/pumaClustii.Rd
man/calculateTtest.Rd
man/pumaFull.Rd
man/puma-package.Rd
man/calculateLimma.Rd
man/bcomb.Rd
man/exprReslt-class.Rd
man/igmoExon.Rd
man/DEResult-class.Rd
man/gmoExon.Rd
man/create_eset_r.Rd
man/orig_pplr.Rd
man/PMmmgmos.Rd
man/legend2.Rd
man/numOfFactorsToUse.Rd
man/eset_mmgmos.Rd
man/createContrastMatrix.Rd
man/license.puma.Rd
man/justmgMOS.Rd
man/pumaComb.Rd
man/erfc.Rd
man/removeUninformativeFactors.Rd
man/pplrUnsorted.Rd
man/pumaPCA.Rd
man/mgmos.Rd
man/calculateFC.Rd
man/pplr.Rd
man/pumaclust.Rd
man/numFP.Rd
man/calcAUC.Rd
man/hgu95aphis.Rd
man/gmhta.Rd
man/normalisation.gs.Rd
man/createDesignMatrix.Rd
man/mmgmos.Rd
man/exampleStd.Rd
man/clusterNormVar.Rd
man/Clust.exampleE.Rd
man/Clustii.exampleStd.Rd
man/clusterNormE.Rd
man/exampleE.Rd
man/Clustii.exampleE.Rd
man/pumaCombImproved.Rd
man/pumaDEUnsorted.Rd
man/pumaPCAExpectations-class.Rd
man/plotErrorBars.Rd
man/plot-methods.Rd
man/plotHistTwoClasses.Rd
man/hcomb.Rd
man/pumaDE.Rd
man/pumaPCAModel-class.Rd
man/Clust.exampleStd.Rd
man/plotROC.Rd
man/matrixDistance.Rd
man/numTP.Rd
inst/CITATION
inst/doc/puma.Rnw
inst/doc/puma.R
inst/doc/puma.pdf
