getConsensusSTRINGIDs: Get consensus graph in STRING IDs.

In pwOmics: Pathway-based data integration of omics data

Description

Get consensus graph in STRING IDs.

Usage

getConsensusSTRINGIDs(data_omics, tps, string_db, updown = FALSE,
  phospho = TRUE)

Arguments

data_omics	OmicsData object.
tps	integer specifying current timepoint under consideration.
string_db	STRING_db object.
updown	boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'.
phospho	boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE.

Value

igraph object consensus graph with STRING IDs (only including proteins and transcription factors).

pwOmics documentation built on Nov. 8, 2020, 4:55 p.m.