genGenelists: Generate genelists from pathway databases.

In pwOmics: Pathway-based data integration of omics data

Description

This function generates genelists from the chosen pathway databases for further processing in detPathways function.

Usage

genGenelists(intIDs, pwdatabases)

Arguments

intIDs	list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA.
pwdatabases	vector indicating with which pathway database the pathways should be determined; possible choices are "biocarta", "kegg", "nci", "reactome".

Value

list of genelists of specified pathway databases.

pwOmics documentation built on Nov. 8, 2020, 4:55 p.m.