identTFTGsinPWs: Prepare OmicsData object for pathway information.

In pwOmics: Pathway-based data integration of omics data

Description

This function identifies the TFs in the pathway genes and determines their target genes on basis of the given (chosen) TF-target database(s).

Usage

identTFTGsinPWs(data_omics, temp_genelist)

Arguments

data_omics	OmicsData object.
temp_genelist	dataframe of unique gene IDs in PWs.

Value

list with first element being a genelist of the pathways and second being a target gene list of TFs.

pwOmics documentation built on Nov. 8, 2020, 4:55 p.m.