genGenelistssub: Generate internally genelists from pathway databases.

In pwOmics: Pathway-based data integration of omics data

Description

This function generates genelists for a particular pathway database for further processing in detPathways function.

Usage

genGenelistssub(intIDs, database_int, PWDB_name)

Arguments

intIDs	list containing Biopax model with newly generated internal IDs as processed with genintIDs function. The components of the list are biopax models for "biocarta", "kegg", "nci", "reactome". In case a database was not chosen the list entry contains a NA.
database_int	integer indicating database entry in indIDs (output of genintIDs); biocarta = 1, kegg = 2, nci = 4, reactome = 4.
PWDB_name	character; pathway database name.

Value

data.table of genelist of particular pathway database.

pwOmics documentation built on Nov. 8, 2020, 4:55 p.m.