API for pwOmics
Pathway-based data integration of omics data

Global functions
OmicsExampleData Man page
PWidentallprots Man page Source code
PWidentallprotssub Man page Source code
PWidenttps Man page Source code
SteinerTree_cons Man page Source code
TFidentallgenes Man page Source code
TFidenttps Man page Source code
addFeedbackLoops Man page Source code
clusterTimeProfiles Man page Source code
consDynamicNet Man page Source code
createBiopaxnew Man page Source code
createIntIDs Man page Source code
findSignalingAxes Man page Source code
findxneighborsoverlap Man page Source code
findxnextneighbors Man page Source code
genGenelists Man page Source code
genGenelistssub Man page Source code
genIntIDs Man page Source code
generate_DSSignalingBase Man page Source code
genfullConsensusGraph Man page Source code
getAlias_Ensemble Man page Source code
getAliasfromSTRINGIDs Man page Source code
getBiopaxModel Man page Source code
getConsensusSTRINGIDs Man page Source code
getDS_PWs Man page Source code
getDS_TFs Man page Source code
getDS_TGs Man page Source code
getFCsplines Man page Source code
getGenesIntersection Man page Source code
getOmicsDataset Man page Source code
getOmicsTimepoints Man page Source code
getOmicsallGeneIDs Man page Source code
getOmicsallProteinIDs Man page Source code
getProteinIntersection Man page Source code
getSTRING_graph Man page Source code
getTFIntersection Man page Source code
getUS_PWs Man page Source code
getUS_TFs Man page Source code
getUS_regulators Man page Source code
get_matching_transcripts Man page Source code
getbipartitegraphInfo Man page Source code
gettpIntersection Man page Source code
identPWsofTFs Man page Source code
identRegulators Man page Source code
identTFTGsinPWs Man page Source code
identTFs Man page Source code
identifyPR Man page Source code
identifyPWTFTGs Man page Source code
identifyPWs Man page Source code
identifyRsofTFs Man page Source code
identifyTFs Man page Source code
loadGenelists Man page Source code
loadPWs Man page Source code
plotConsDynNet Man page Source code
plotConsensusGraph Man page Source code
plotConsensusProfiles Man page Source code
plotTimeProfileClusters Man page Source code
predictFCvals Man page Source code
preparePWinfo Man page Source code
print.OmicsData Man page Source code
pwIntOmics Man page
pwIntOmics-package Man page
readOmics Man page Source code
readPWdata Man page Source code
readPhosphodata Man page Source code
readTFdata Man page Source code
readTFtargets Man page Source code
selectPWsofTFs Man page Source code
staticConsensusNet Man page Source code
temp_correlations Man page Source code
pwOmics documentation built on May 31, 2017, 11:11 a.m.