PWidentallprotssub: Internal subfunction for all protein pathway identification.

In pwOmics: Pathway-based data integration of omics data

Description

Internal subfunction for all protein pathway identification.

Usage

PWidentallprotssub(data_omics, genelists, genelist_ind, datab)

Arguments

data_omics	OmicsData object.
genelists	lists of genelists from chosen pathway databases
genelist_ind	integer specifying pathway database genelist matching; 1 = biocarta, 2 = kegg, 3 = nci, 4 = reactome.
datab	character vector indicating database name for message.

Value

OmicsData object with identified pathways for each protein.

pwOmics documentation built on Nov. 8, 2020, 4:55 p.m.