readTFtargets: Read in matching transcription factor target gene pairs.
In pwOmics: Pathway-based data integration of omics data
Description
Usage
Arguments
Value
View source: R/pwOmics_helper_functions.R
Description
In case the user is able to provide a file with transcription factor -
target gene matches (e.g. from TRANSFAC database) this function can read in
the information.
The file needs to be a txt file with first column transcription factors and
second column target gene symbols without a header.
Usage
1
readTFtargets(data_omics, TF_target_path)
Arguments
data_omics
OmicsData object.
TF_target_path
path of txt file containing the transcription factor
target gene information as specified above.
Value
data frame with user-specified TF target gene information.
pwOmics documentation built on Nov. 8, 2020, 4:55 p.m.
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Description Usage Arguments Value
View source: R/pwOmics_helper_functions.R
Description
In case the user is able to provide a file with transcription factor - target gene matches (e.g. from TRANSFAC database) this function can read in the information. The file needs to be a txt file with first column transcription factors and second column target gene symbols without a header.
Usage
1 | readTFtargets(data_omics, TF_target_path)
|
Arguments
data_omics |
OmicsData object. |
TF_target_path |
path of txt file containing the transcription factor target gene information as specified above. |
Value
data frame with user-specified TF target gene information.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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