API for scPipe
pipeline for single cell RNA-seq data analysis
| Global functions | |
|---|---|
| .guess_attr | Source code |
| .qq_outliers_robust | Source code |
| QC_metrics | Man page Man page Man page Man page |
| QC_metrics,SingleCellExperiment-method | Man page |
| QC_metrics.sce | Man page Source code |
| QC_metrics<- | Man page |
| QC_metrics<-,SingleCellExperiment-method | Man page |
| UMI_dup_info | Man page Man page Man page Man page |
| UMI_dup_info,SingleCellExperiment-method | Man page |
| UMI_dup_info.sce | Man page Source code |
| UMI_dup_info<- | Man page |
| UMI_dup_info<-,SingleCellExperiment-method | Man page |
| UMI_duplication | Man page |
| anno_import | Man page Source code |
| anno_to_saf | Man page Source code |
| calculate_QC_metrics | Man page Source code |
| cell_barcode_matching | Man page |
| convert_geneid | Man page Source code |
| create_processed_report | Man page Source code |
| create_report | Man page Source code |
| create_sce_by_dir | Man page Source code |
| demultiplex_info | Man page Man page Man page Man page |
| demultiplex_info,SingleCellExperiment-method | Man page |
| demultiplex_info.sce | Man page Source code |
| demultiplex_info<- | Man page |
| demultiplex_info<-,SingleCellExperiment-method | Man page |
| detect_outlier | Man page Source code |
| gene_id_type | Man page Man page Man page Man page |
| gene_id_type,SingleCellExperiment-method | Man page |
| gene_id_type.sce | Man page Source code |
| gene_id_type<- | Man page |
| gene_id_type<-,SingleCellExperiment-method | Man page |
| get_ercc_anno | Man page Source code |
| get_genes_by_GO | Man page Source code |
| get_read_str | Man page Source code |
| infer_gene_id_from_dbx | Source code |
| infer_gene_id_from_parent | Source code |
| infer_gene_ids | Source code |
| organism | Man page Man page |
| organism,SingleCellExperiment-method | Man page |
| organism.sce | Man page Source code |
| organism<-,SingleCellExperiment-method | Man page |
| plot_QC_pairs | Man page Source code |
| plot_UMI_dup | Man page Source code |
| plot_demultiplex | Man page Source code |
| plot_mapping | Man page Source code |
| rcpp_sc_clean_bam | Source code |
| rcpp_sc_demultiplex | Source code |
| rcpp_sc_detect_bc | Source code |
| rcpp_sc_exon_mapping | Source code |
| rcpp_sc_exon_mapping_df_anno | Source code |
| rcpp_sc_gene_counting | Source code |
| rcpp_sc_trim_barcode_paired | Source code |
| remove_outliers | Man page Source code |
| scPipe | Man page |
| scPipe-package | Man page Man page |
| sc_correct_bam_bc | Man page Source code |
| sc_count_aligned_bam | Man page Source code |
| sc_demultiplex | Man page Source code |
| sc_demultiplex_and_count | Man page Source code |
| sc_detect_bc | Man page Source code |
| sc_exon_mapping | Man page Source code |
| sc_gene_counting | Man page Source code |
| sc_sample_data | Man page |
| sc_sample_qc | Man page |
| sc_trim_barcode | Man page Source code |
| validObject | Source code |
| validate_saf | Source code |
