enrichment_geneSet: enrichment_geneSet

In scsR: SiRNA correction for seed mediated off-target effect

Description

Computes the hypergeometric p-value that represents the enrichment of genesetA with genes of the genesetB.

Usage

enrichment_geneSet(genesetA, genesetB, background=NULL, quiet=FALSE)

Arguments

genesetA	vector of sorted genes (vector of strings)
genesetB	vector of sorted genes (vector of strings)
background	vector of genes to be used as background (vector of strings)
quiet	avoid print any message/warning (boolean)

Value

the hypergeometric p-value that represents the enrichment of genesetA with genes of the genesetB. (integer)

Author(s)

Andrea Franceschini

Examples

	data(uuk_screen)
	data(uuk_screen_dh) 
	enrichment_geneSet(unique(uuk_screen$GeneID)[1:200], 
                   unique(uuk_screen_dh$GeneID)[1:400], 
                   intersect(uuk_screen$GeneID, uuk_screen_dh$GeneID))

scsR documentation built on April 28, 2020, 7:11 p.m.