randomizeInner: randomizeInner

In scsR: SiRNA correction for seed mediated off-target effect

Description

randomize an inner field (e.g. the scores of the oligos of a gene), keeping unaltered the order of the outer field (e.g. the genes)

Usage

randomizeInner(df, baseColStr, sortColStr, reverse = FALSE) 

Arguments

df	input data frame
baseColStr	name of the column that represents the outer field (e.g. the genes) (character vector)
sortColStr	name of the column that represents the inner field (e.g. the scores of the oligos of a gene) (character vector)
reverse	specify the direction of the sorting (boolean)

Value

data frame with the randomized rows.

Author(s)

Andrea Franceschini

Examples

	data(uuk_screen)

	# to speed up the example we use only the first 1000 rows
	uuk_screen_reduced = uuk_screen[1:1000,]

	screen <- randomizeInner(arrange(uuk_screen_reduced, GeneID), "GeneID", "score")

scsR documentation built on April 28, 2020, 7:11 p.m.