API for seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
| Global functions | |
|---|---|
| .get.pattern.occurence.melted | Source code |
| .get.scanning.score | Source code |
| .myColorPalette | Source code |
| .pattern.smoothscatter | Source code |
| .plot.motif.heatmap | Source code |
| .plot.windowed.average | Source code |
| .scan.sequence.with.pwm | Source code |
| .smoothScatter | Source code |
| TBPpwm | Man page |
| getPatternOccurrenceList | Man page |
| getPatternOccurrenceList,DNAStringSet-method | Man page |
| log5 | Source code |
| motifScanHits | Man page |
| motifScanHits,DNAStringSet,matrix-method | Man page |
| motifScanScores | Man page |
| motifScanScores,DNAStringSet,matrix-method | Man page |
| plotMotifDensityMap | Man page |
| plotMotifDensityMap,DNAStringSet,matrix-method | Man page |
| plotMotifOccurrenceAverage | Man page |
| plotMotifOccurrenceAverage,DNAStringSet,matrix-method | Man page |
| plotMotifScanScores | Man page |
| plotMotifScanScores,DNAStringSet,matrix-method | Man page |
| plotPatternDensityMap | Man page |
| plotPatternDensityMap,DNAStringSet-method | Man page |
| plotPatternOccurrenceAverage | Man page |
| plotPatternOccurrenceAverage,DNAStringSet-method | Man page |
| seqPattern | Man page |
| seqPattern-package | Man page |
| zebrafishPromoters | Man page |
| zebrafishPromoters24h | Man page |
