Man pages for seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
| getPatternOccurrenceList | Occurrence of sequence patterns in a set of ordered sequences |
| motifScanHits | Occurrence of motifs in a set of ordered sequences |
| motifScanScores | Motif scanning scores for a set of ordered sequences |
| plotMotifDensityMap | Plotting density maps of motif occurrence |
| plotMotifOccurrenceAverage | Plotting average profile of motif occurrence |
| plotMotifScanScores | Plotting heatmap of motif scanning scores |
| plotPatternDensityMap | Plotting density maps of sequence pattern occurrence |
| plotPatternOccurrenceAverage | Plotting average profile of sequence pattern occurrence |
| seqPattern-package | Visualising oligonucleotide patterns and motif occurences... |
| TBPpwm | Position-weight matrix for TATA-box binding protein motif |
| zebrafisPromoters | Zebrafish promoters sequences |
| zebrafisPromoters24h | Zebrafish promoters genomic coordinates |
