API for sigaR
Statistics for Integrative Genomics Analyses in R
| Global functions | |
|---|---|
| .R2.stat | Source code |
| .RCMloss-method | Man page |
| .alphabivariate | Source code |
| .alphaest | Source code |
| .countdiscoveries | Source code |
| .countth | Source code |
| .countth.eff | Source code |
| .covMatConstruction | Source code |
| .datareduce | Source code |
| .find.cgh.reg.data | Source code |
| .lambda.per.reg | Source code |
| .makeSegments | Source code |
| .matrixRows2list | Source code |
| .minDistCghFeature_CGHcall2ExpressionSet | Source code |
| .minDistFeature | Source code |
| .nulldist.all.wcvm | Source code |
| .nulldist.all.wmw | Source code |
| .overlapPercentage | Source code |
| .overlapPercentage_CGHcall2ExpressionSet | Source code |
| .overlapPlusInterpolation_CGHcall2ExpressionSet | Source code |
| .pi0est | Source code |
| .powerunbalance | Source code |
| .pretest | Source code |
| .prob.test.stats | Source code |
| .probs2calls | Source code |
| .pval.perm.marg | Source code |
| .pvalbound | Source code |
| .rawps | Source code |
| .redraw | Source code |
| .redrawcol | Source code |
| .shift.est | Source code |
| .shrin.an.prob | Source code |
| .shrin.an.wcvm | Source code |
| .slhFuncCombineFeatureNames | Source code |
| .slhFuncMaxCGHcallData | Source code |
| .slhFuncWeightedCGHcallExpressionSetAnnotation | Source code |
| .slhFuncWeightedCGHcallExpressionSetData | Source code |
| .slhFunctMaxFeatures | Source code |
| .tuning | Source code |
| .uni.an.prob | Source code |
| .uni.an.wcvm | Source code |
| .wcvm.test.stats | Source code |
| .wmw.test.stats | Source code |
| CNGEheatmaps | Man page Source code |
| ExpressionSet2order | Man page Source code |
| ExpressionSet2subset | Man page Source code |
| ExpressionSet2weightedSubset | Man page Source code |
| RCMestimation | Man page Source code |
| RCMrandom | Man page |
| RCMrandom,rcmFit-method | Man page |
| RCMrandom-method | Man page |
| RCMtest | Man page Source code |
| cghCall2cghSeg | Man page |
| cghCall2maximumSubset | Man page Source code Source code |
| cghCall2order | Man page Source code |
| cghCall2subset | Man page Source code |
| cghCall2weightedSubset | Man page Source code |
| cghSeg2order | Man page Source code |
| cghSeg2subset | Man page |
| cghSeg2weightedSubset | Man page |
| cisEffectPlot | Man page |
| cisEffectTable | Man page |
| cisEffectTest | Man page Source code |
| cisEffectTune | Man page Source code |
| cisTest-class | Man page |
| entTest-class | Man page |
| entropyTest | Man page Source code |
| expandMatching2singleIDs | Man page Source code |
| getSegFeatures | Man page Source code |
| hdEntropy | Man page Source code |
| hdMI | Man page Source code |
| matchAnn2Ann | Man page Source code |
| matchCGHcall2ExpressionSet | Man page Source code |
| merge2ExpressionSets | Man page Source code |
| merge2cghCalls | Man page Source code |
| miTest-class | Man page |
| mutInfTest | Man page Source code |
| nBreakpoints | Man page Source code |
| pathway1sample | Man page Source code |
| pathway2sample | Man page Source code |
| pathwayFit-class | Man page |
| pathwayPlot | Man page Source code |
| pollackCN16 | Man page |
| pollackGE16 | Man page |
| profilesPlot | Man page Source code |
| rcmFit-class | Man page |
| rcmTest-class | Man page |
| sigaR | Man page |
| sigaR-package | Man page |
| splitMatchingAtBreakpoints | Man page Source code |
| summary,ANY-method | Man page |
| summary,entTest-method | Man page |
| summary,miTest-method | Man page |
| summary,rcmFit-method | Man page |
| summary,rcmTest-method | Man page |
| summary-method | Man page |
| uniqGenomicInfo | Man page Source code |
