Description Slots Methods Author(s) See Also Examples

The class `pathwayFit`

is the output of a call to `pathway1sample`

and `pathway2sample`

.
It stores results from fitting a simultaneous-equations model from DNA copy number and gene expression data.

`Cis`

:Object of class

`"numeric"`

. Vector of estimated*cis*-effect.`Trans`

:Object of class

`"matrix"`

. Matrix containing the*trans*-effects (one-sample only).`Trans1`

:Object of class

`"matrix"`

. Matrix containing the*trans*-effects of the first sample (two-sample only).`Trans2`

:Object of class

`"matrix"`

. Matrix containing the*trans*-effects of the second sample (two-sample only).`Sigma`

:Object of class

`"numeric"`

. Vector of estimated residual variances.`lambda1`

:Object of class

`"matrix"`

. Lasso parameter(s) employed.`lambdaF`

:Object of class

`"matrix"`

. Fused lasso parameter(s) employed.`constr`

:Object of class

`"logical"`

. Indicator for parameter constraints on*cis*-effect.`epsilon`

:Object of class

`"numeric"`

. Constant used for the stabilization of estimation in a high-dimensional context.`method`

:Object of class

`"character"`

. Indicator for method used in model fitting.

- pathwayPlot
`signature(object = "pathwayFit")`

: Plots the`pathwayFit`

-object.

Wessel N. van Wieringen: [email protected]

See also `pathway1sample`

and `pathway2sample`

.

1 | ```
showClass("pathwayFit")
``` |

sigaR documentation built on May 6, 2019, 3:40 a.m.

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