rcmTest-class: Class "rcmTest" for storing the results of the function...

In sigaR: Statistics for Integrative Genomics Analyses in R

Description

The class rcmTest is the output of a call to RCMtest. It stores results from a hypothesis test.

Slots

statistic:

Object of class "numeric". Observed test statistic (i.e., estimated mutual information).

p.value:

Object of class "numeric". P-value for the mutual information test.

betas:

Object of class "numeric". Vector of estimated global regression coefficients for each of the covariates in the design matrix.

tau2s:

Object of class "numeric". Vector of estimated regression coefficient variances for each of the covariates in the design matrix.

sigma2s:

Object of class "numeric". Vector of estimated error variances for all features.

rho:

Object of class "numeric". Estimated correlation parameter between the error of two contiguous features.

av.sigma2s:

Object of class "numeric". Average of the unshrunken estimated error variances.

shrinkage:

Object of class "numeric". Type of shrinkage applied in the estimation.

loglik:

Object of class "numeric". The log-likelihood of the fitted model.

nBoot:

Object of class "numeric". Number of bootstraps used for p-value calculation.

corType:

Object of class "character". Correlation structure used in the fitted model.

null.dist:

Object of class "numeric". The permutation null distribution for the test statistic.

remark:

Object of class "character". Tells whether the bootstrapping was terminated prematurely or not.

Methods

summary

signature(object = "rcmTest"): Prints the test results.

Author(s)

Wessel van Wieringen: [e-mail]

See Also

RCMtest

Examples

showClass("rcmTest")

sigaR documentation built on April 28, 2020, 6:05 p.m.