cghCall2cghSeg: Genomic ordering of cghSeg-objects.

In sigaR: Statistics for Integrative Genomics Analyses in R

Description

Transforms a cghCall-object to a cghSeg-object, by removing the slots present in the former but not in the latter.

Usage

cghCall2cghSeg(CNdata, verbose=TRUE)

Arguments

CNdata	Object of class cghCall.
verbose	Logical indicator: should intermediate output be printed on the screen?

Value

Object of class cghSeg.

Author(s)

Wessel N. van Wieringen: [e-mail]

References

Van de Wiel, M.A., Kim, K.I., Vosse, S.J., Van Wieringen, W.N., Wilting, S.M. , Ylstra, B. (2007), "CGHcall: an algorithm for calling aberrations for multiple array CGH tumor profiles", Bioinformatics, 23, 892-894.

See Also

cghCall, cghSeg.

Examples

# load data
data(pollackCN16) 

# reduce the cghCall-object to a cghSeg-object
pollackCN16seg <- cghCall2cghSeg(pollackCN16) 

sigaR documentation built on April 28, 2020, 6:05 p.m.