spikeLI: Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

AuthorDelphine Baillon, Paul Leclercq <paulleclercq@hotmail.com>, Sarah Ternisien, Thomas Heim, Enrico Carlon <enrico.carlon@fys.kuleuven.be>
Date of publicationNone
MaintainerEnrico Carlon <enrico.carlon@fys.kuleuven.be>
LicenseGPL-2
Version2.34.0

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Files

spikeLI/DESCRIPTION
spikeLI/NAMESPACE
spikeLI/R
spikeLI/R/IvsDG.R spikeLI/R/Ivsc.R spikeLI/R/collapse.R spikeLI/R/zzz.R
spikeLI/build
spikeLI/build/vignette.rds
spikeLI/data
spikeLI/data/SPIKE_IN.rda
spikeLI/data/SPIKE_IN95.rda
spikeLI/data/SPIKE_INA.rda
spikeLI/data/SPIKE_INB.rda
spikeLI/data/SPIKE_INH.rda
spikeLI/data/conc133.rda
spikeLI/data/conc95.rda
spikeLI/data/hgu.rda
spikeLI/demo
spikeLI/demo/00Index
spikeLI/demo/spikeLI.R
spikeLI/inst
spikeLI/inst/doc
spikeLI/inst/doc/spikeLI.Rnw
spikeLI/inst/doc/spikeLI.pdf
spikeLI/man
spikeLI/man/IvsDG.Rd spikeLI/man/Ivsc.Rd spikeLI/man/SPIKE_IN.Rd spikeLI/man/SPIKE_IN95.Rd spikeLI/man/SPIKE_INA.Rd spikeLI/man/SPIKE_INB.Rd spikeLI/man/SPIKE_INH.Rd spikeLI/man/collapse.Rd spikeLI/man/conc133.Rd spikeLI/man/conc95.Rd spikeLI/man/hgu.Rd spikeLI/man/spikeLI.package.Rd
spikeLI/vignettes
spikeLI/vignettes/IvsDG_TagE.pdf
spikeLI/vignettes/Ivsc.pdf
spikeLI/vignettes/collapse_A14.pdf
spikeLI/vignettes/langmuir2.pdf
spikeLI/vignettes/spikeLI.Rnw

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