hgu: Selected Probe Set data

In spikeLI: Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Description

This selected probe sets information contains the sequence of the selected probe sets, as well as the match and mismatch onformation and Delta G value required for the langmuir analysis

Usage

data(hgu)

Format

A data frame with 11452 observations on the following 9 variables.

Probe.Set.Name

Name of probe set

conc

a numeric vector

Ipm

a numeric vector

Imm

a numeric vector

Seq

DNA Sequence of the probe

DGpm

DG value of perfect match of the probe

DGmm

Delta G value of the mismatch of the probe

DGRNA

Delta G value of the RNA

FILE

a factor with levels HGU133 HGU95

References

E. Carlon and T. Heim, Physica A 362, 433 (2006).

See Also

Ivsc, IvsDG, collapse, SPIKE_IN, SPIKE_INA, SPIKE_INB, SPIKE_INH

Examples

data(hgu)
## maybe str(hgu) ; plot(hgu) ...

spikeLI documentation built on Nov. 8, 2020, 5:54 p.m.