IvsDG: Plot Intensity as function of the affinity for a given probe...

In spikeLI: Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Description

IvsDG plots intensity vs affinity (or free energy) for a probe set at a given concentration. The outcome is compared with the prediction from the Langmuir isotherm at that concentration. Two graphs are shown: on the left intensity vs. probe number for PM (blue) and MM (red); on the right the same value plotted as function of the affinities. The black line is the Langmuir Isotherm at the given concentration. The two green lines correspond to concentrations fourfold higher and lower compared to the given one.

Usage

IvsDG(probe_set, conc, outfile = "NULL")

Arguments

probe_set	Probe set number of the probe set analyzed
conc	Concentration value
outfile	"PS" output on a postscript file

Author(s)

Delphine Baillon, Paul Leclercq, Sarah Ternisien, Thomas Heim and Enrico Carlon

Maintainer: Enrico Carlon <[e-mail]>

References

E. Carlon and T. Heim, Physica A 362, 433 (2006).

See Also

Ivsc, collapse, hgu, SPIKE_IN, SPIKE_INA, SPIKE_INB, SPIKE_INH

Examples

     data(hgu)
     IvsDG("1024_at",64)

spikeLI documentation built on Nov. 8, 2020, 5:54 p.m.