SPIKE_INA: Artificial Spike-in probesets

In spikeLI: Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Description

This dataset contains the names of the probesets contained in the hgu dataset

Usage

data(SPIKE_INA)

Format

This dataset contains a set of String containing the names of the Artificial genes contained in the HGU dataset

References

E. Carlon and T. Heim, Physica A 362, 433 (2006).

See Also

Ivsc, IvsDG, collapse, SPIKE_IN, hgu , SPIKE_INB, SPIKE_INH

Examples

## you can first check if the data matches the predicted hybridisation value according to the langmuir 
## value, from the intensity versus the concentration value
Ivsc(SPIKE_INA[1])

## you can then plot the value of the Intensity of the probe with the predicted value of the hybridisation
## according to the Delta G, value
IvsDG(SPIKE_INA[4],128)

## The collapse function will finally plot all the values of the probe set according to 
## the langmuir absorption theory

collapse(SPIKE_INA[2])

## By comparing the matched value and the mismatches, you will be able to identify errors which 
## could have done while sampling the data, or if the error happens repeatedly this will show errors 
## which will have happened while sequencing old data.

spikeLI documentation built on Nov. 8, 2020, 5:54 p.m.