plotSpkBox: Boxplots of Fold Changes Calculated by spkBox

In spkTools: Methods for Spike-in Arrays

Description

Plots boxplots of the data resulting from a call to spkBox.

Usage

plotSpkBox(boxs, fc=2, box.names=NULL, ...)

Arguments

boxs	the output of a call to spkBox
fc	expected fold change
box.names	names to be printed below each boxplot
...	parameters passed to boxplot

Value

Boxplots for spike-in and non-spike-in comparisons stratified by ALE strata are produced.

Author(s)

Matthew N. McCall

Examples

data(affy)
affySlope <- spkSlope(affy)
affyBox <- spkBox(affy, affySlope)
plotSpkBox(affyBox) 

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    anyDuplicated, append, as.data.frame, basename, cbind, colnames,
    dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
    grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
    rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

spkTools documentation built on Nov. 8, 2020, 6:55 p.m.