| ANOVA |
Man page
Source code
|
| AUC |
Man page
Source code
|
| DFA |
Man page
Source code
|
| DatasetExperiment_boxplot |
Man page
Source code
|
| DatasetExperiment_dist |
Man page
Source code
|
| DatasetExperiment_factor_boxplot |
Man page
Source code
|
| DatasetExperiment_heatmap |
Man page
Source code
|
| HCA |
Man page
Source code
|
| HSD |
Man page
Source code
|
| HSDEM |
Man page
Source code
|
| MTBLS79_DatasetExperiment |
Man page
Source code
|
| PCA |
Man page
Source code
|
| PLSDA |
Man page
Source code
|
| PLSR |
Man page
Source code
|
| SVM |
Man page
Source code
|
| aov2lme |
Source code
|
| as_data_frame |
Man page
|
| as_data_frame,filter_na_count-method |
Man page
|
| as_data_frame,ttest-method |
Man page
|
| as_data_frame,wilcox_test-method |
Man page
|
| ascale |
Source code
|
| autoscale |
Man page
Source code
|
| balanced_accuracy |
Man page
Source code
|
| blank_filter |
Man page
Source code
|
| blank_filter_hist |
Man page
Source code
|
| bootstrap |
Man page
Source code
|
| calculate |
Man page
|
| calculate,AUC-method |
Man page
|
| calculate,balanced_accuracy-method |
Man page
|
| calculate,r_squared-method |
Man page
|
| center_colmeans |
Source code
|
| chart_plot |
Man page
|
| chart_plot,DatasetExperiment_boxplot,DatasetExperiment-method |
Man page
|
| chart_plot,DatasetExperiment_dist,DatasetExperiment-method |
Man page
|
| chart_plot,DatasetExperiment_factor_boxplot,DatasetExperiment-me |
Man page
|
| chart_plot,DatasetExperiment_heatmap,DatasetExperiment-method |
Man page
|
| chart_plot,blank_filter_hist,blank_filter-method |
Man page
|
| chart_plot,compare_dist,DatasetExperiment-method |
Man page
|
| chart_plot,confounders_lsq_barchart,confounders_clsq-method |
Man page
|
| chart_plot,confounders_lsq_boxplot,confounders_clsq-method |
Man page
|
| chart_plot,dfa_scores_plot,DFA-method |
Man page
|
| chart_plot,feature_boxplot,DatasetExperiment-method |
Man page
|
| chart_plot,feature_profile,DatasetExperiment-method |
Man page
|
| chart_plot,fold_change_plot,fold_change-method |
Man page
|
| chart_plot,fs_line,forward_selection_by_rank-method |
Man page
|
| chart_plot,glog_opt_plot,glog_transform-method |
Man page
|
| chart_plot,gs_line,grid_search_1d-method |
Man page
|
| chart_plot,hca_dendrogram,HCA-method |
Man page
|
| chart_plot,kfoldxcv_grid,kfold_xval-method |
Man page
|
| chart_plot,kfoldxcv_metric,kfold_xval-method |
Man page
|
| chart_plot,kw_p_hist,kw_rank_sum-method |
Man page
|
| chart_plot,mv_boxplot,DatasetExperiment-method |
Man page
|
| chart_plot,mv_feature_filter_hist,mv_feature_filter-method |
Man page
|
| chart_plot,mv_histogram,DatasetExperiment-method |
Man page
|
| chart_plot,mv_sample_filter_hist,mv_sample_filter-method |
Man page
|
| chart_plot,pca_biplot,PCA-method |
Man page
|
| chart_plot,pca_correlation_plot,PCA-method |
Man page
|
| chart_plot,pca_dstat_plot,PCA-method |
Man page
|
| chart_plot,pca_loadings_plot,PCA-method |
Man page
|
| chart_plot,pca_scores_plot,PCA-method |
Man page
|
| chart_plot,pca_scree_plot,PCA-method |
Man page
|
| chart_plot,permutation_test_plot,permutation_test-method |
Man page
|
| chart_plot,plsda_predicted_plot,PLSDA-method |
Man page
|
| chart_plot,plsda_regcoeff_plot,PLSDA-method |
Man page
|
| chart_plot,plsda_roc_plot,PLSDA-method |
Man page
|
| chart_plot,plsda_scores_plot,PLSDA-method |
Man page
|
| chart_plot,plsda_vip_plot,PLSDA-method |
Man page
|
| chart_plot,plsr_cook_dist,PLSR-method |
Man page
|
| chart_plot,plsr_prediction_plot,PLSR-method |
Man page
|
| chart_plot,plsr_qq_plot,PLSR-method |
Man page
|
| chart_plot,plsr_residual_hist,PLSR-method |
Man page
|
| chart_plot,pqn_norm_hist,pqn_norm-method |
Man page
|
| chart_plot,rsd_filter_hist,rsd_filter-method |
Man page
|
| chart_plot,svm_plot_2d,SVM-method |
Man page
|
| chart_plot,tSNE_scatter,tSNE-method |
Man page
|
| chart_plot,wilcox_p_hist,wilcox_test-method |
Man page
|
| ci_delta_nu |
Source code
|
| circleFun |
Source code
|
| classical_lsq |
Man page
Source code
|
| compare_dist |
Man page
Source code
|
| confounders_clsq |
Man page
Source code
|
| confounders_lsq_barchart |
Man page
Source code
|
| confounders_lsq_boxplot |
Man page
Source code
|
| constant_sum_norm |
Man page
Source code
|
| corr_coef |
Man page
Source code
|
| dfa_scores_plot |
Man page
Source code
|
| dratio_filter |
Man page
Source code
|
| eval_loess |
Source code
|
| feature_boxplot |
Man page
Source code
|
| feature_profile |
Man page
Source code
|
| filter_by_name |
Man page
Source code
|
| filter_na_count |
Man page
Source code
|
| filter_smeta |
Man page
Source code
|
| first_min |
Source code
|
| fisher_exact |
Man page
Source code
|
| fold_change |
Man page
Source code
|
| fold_change_int |
Man page
Source code
|
| fold_change_plot |
Man page
Source code
|
| forward_selection_by_rank |
Man page
Source code
|
| fs_line |
Man page
Source code
|
| full_fact |
Source code
|
| gauss_intersect |
Source code
|
| get_description |
Source code
|
| glog_opt_plot |
Man page
Source code
|
| glog_transform |
Man page
Source code
|
| grid_search_1d |
Man page
Source code
|
| gs_line |
Man page
Source code
|
| hca_dendrogram |
Man page
Source code
|
| kfold_xval |
Man page
Source code
|
| kfoldxcv_grid |
Man page
Source code
|
| kfoldxcv_metric |
Man page
Source code
|
| knn_impute |
Man page
Source code
|
| kw_p_hist |
Man page
Source code
|
| kw_rank_sum |
Man page
Source code
|
| linear_model |
Man page
Source code
|
| log_transform |
Man page
Source code
|
| mean_centre |
Man page
Source code
|
| mean_of_medians |
Man page
Source code
|
| mixed_effect |
Man page
Source code
|
| model_apply |
Man page
|
| model_apply,ANOVA,DatasetExperiment-method |
Man page
|
| model_apply,HCA,DatasetExperiment-method |
Man page
|
| model_apply,HSD,DatasetExperiment-method |
Man page
|
| model_apply,HSDEM,DatasetExperiment-method |
Man page
|
| model_apply,classical_lsq,DatasetExperiment-method |
Man page
|
| model_apply,confounders_clsq,DatasetExperiment-method |
Man page
|
| model_apply,constant_sum_norm,DatasetExperiment-method |
Man page
|
| model_apply,corr_coef,DatasetExperiment-method |
Man page
|
| model_apply,filter_smeta,DatasetExperiment-method |
Man page
|
| model_apply,fisher_exact,DatasetExperiment-method |
Man page
|
| model_apply,fold_change,DatasetExperiment-method |
Man page
|
| model_apply,fold_change_int,DatasetExperiment-method |
Man page
|
| model_apply,knn_impute,DatasetExperiment-method |
Man page
|
| model_apply,kw_rank_sum,DatasetExperiment-method |
Man page
|
| model_apply,log_transform,DatasetExperiment-method |
Man page
|
| model_apply,mean_of_medians,DatasetExperiment-method |
Man page
|
| model_apply,mixed_effect,DatasetExperiment-method |
Man page
|
| model_apply,mv_sample_filter,DatasetExperiment-method |
Man page
|
| model_apply,nroot_transform,DatasetExperiment-method |
Man page
|
| model_apply,pairs_filter,DatasetExperiment-method |
Man page
|
| model_apply,pqn_norm,DatasetExperiment-method |
Man page
|
| model_apply,prop_na,DatasetExperiment-method |
Man page
|
| model_apply,rsd_filter,DatasetExperiment-method |
Man page
|
| model_apply,sb_corr,DatasetExperiment-method |
Man page
|
| model_apply,split_data,DatasetExperiment-method |
Man page
|
| model_apply,stratified_split,DatasetExperiment-method |
Man page
|
| model_apply,tSNE,DatasetExperiment-method |
Man page
|
| model_apply,ttest,DatasetExperiment-method |
Man page
|
| model_apply,vec_norm,DatasetExperiment-method |
Man page
|
| model_apply,wilcox_test,DatasetExperiment-method |
Man page
|
| model_predict |
Man page
|
| model_predict,DFA,DatasetExperiment-method |
Man page
|
| model_predict,PCA,DatasetExperiment-method |
Man page
|
| model_predict,PLSDA,DatasetExperiment-method |
Man page
|
| model_predict,PLSR,DatasetExperiment-method |
Man page
|
| model_predict,SVM,DatasetExperiment-method |
Man page
|
| model_predict,autoscale,DatasetExperiment-method |
Man page
|
| model_predict,blank_filter,DatasetExperiment-method |
Man page
|
| model_predict,constant_sum_norm,DatasetExperiment-method |
Man page
|
| model_predict,dratio_filter,DatasetExperiment-method |
Man page
|
| model_predict,filter_by_name,DatasetExperiment-method |
Man page
|
| model_predict,filter_na_count,DatasetExperiment-method |
Man page
|
| model_predict,filter_smeta,DatasetExperiment-method |
Man page
|
| model_predict,glog_transform,DatasetExperiment-method |
Man page
|
| model_predict,linear_model,DatasetExperiment-method |
Man page
|
| model_predict,mean_centre,DatasetExperiment-method |
Man page
|
| model_predict,mv_feature_filter,DatasetExperiment-method |
Man page
|
| model_predict,mv_sample_filter,DatasetExperiment-method |
Man page
|
| model_predict,pareto_scale,DatasetExperiment-method |
Man page
|
| model_predict,vec_norm,DatasetExperiment-method |
Man page
|
| model_reverse |
Man page
|
| model_reverse,autoscale,DatasetExperiment-method |
Man page
|
| model_reverse,mean_centre,DatasetExperiment-method |
Man page
|
| model_train |
Man page
|
| model_train,DFA,DatasetExperiment-method |
Man page
|
| model_train,PCA,DatasetExperiment-method |
Man page
|
| model_train,PLSDA,DatasetExperiment-method |
Man page
|
| model_train,PLSR,DatasetExperiment-method |
Man page
|
| model_train,SVM,DatasetExperiment-method |
Man page
|
| model_train,autoscale,DatasetExperiment-method |
Man page
|
| model_train,blank_filter,DatasetExperiment-method |
Man page
|
| model_train,constant_sum_norm,DatasetExperiment-method |
Man page
|
| model_train,dratio_filter,DatasetExperiment-method |
Man page
|
| model_train,filter_by_name,DatasetExperiment-method |
Man page
|
| model_train,filter_na_count,DatasetExperiment-method |
Man page
|
| model_train,filter_smeta,DatasetExperiment-method |
Man page
|
| model_train,glog_transform,DatasetExperiment-method |
Man page
|
| model_train,linear_model,DatasetExperiment-method |
Man page
|
| model_train,mean_centre,DatasetExperiment-method |
Man page
|
| model_train,mv_feature_filter,DatasetExperiment-method |
Man page
|
| model_train,mv_sample_filter,DatasetExperiment-method |
Man page
|
| model_train,pareto_scale,DatasetExperiment-method |
Man page
|
| model_train,vec_norm,DatasetExperiment-method |
Man page
|
| mv_boxplot |
Man page
Source code
|
| mv_feature_filter |
Man page
Source code
|
| mv_feature_filter_hist |
Man page
Source code
|
| mv_histogram |
Man page
Source code
|
| mv_sample_filter |
Man page
Source code
|
| mv_sample_filter_hist |
Man page
Source code
|
| nroot_transform |
Man page
Source code
|
| pairs_filter |
Man page
Source code
|
| pareto_scale |
Man page
Source code
|
| pca_biplot |
Man page
Source code
|
| pca_correlation_plot |
Man page
Source code
|
| pca_dstat_plot |
Man page
Source code
|
| pca_loadings_plot |
Man page
Source code
|
| pca_scores_plot |
Man page
Source code
|
| pca_scree_plot |
Man page
Source code
|
| permutation_test |
Man page
Source code
|
| permutation_test_plot |
Man page
Source code
|
| permute_sample_order |
Man page
Source code
|
| plsda_predicted_plot |
Man page
Source code
|
| plsda_regcoeff_plot |
Man page
Source code
|
| plsda_roc_plot |
Man page
Source code
|
| plsda_scores_plot |
Man page
Source code
|
| plsda_vip_plot |
Man page
Source code
|
| plsr_cook_dist |
Man page
Source code
|
| plsr_prediction_plot |
Man page
Source code
|
| plsr_qq_plot |
Man page
Source code
|
| plsr_residual_hist |
Man page
Source code
|
| pqn_norm |
Man page
Source code
|
| pqn_norm_hist |
Man page
Source code
|
| prob |
Source code
|
| prop_na |
Man page
Source code
|
| pscale |
Source code
|
| r_squared |
Man page
Source code
|
| rsd_filter |
Man page
Source code
|
| rsd_filter_hist |
Man page
Source code
|
| run |
Man page
|
| run,bootstrap,DatasetExperiment,metric-method |
Man page
|
| run,forward_selection_by_rank,DatasetExperiment,metric-method |
Man page
|
| run,grid_search_1d,DatasetExperiment,metric-method |
Man page
|
| run,kfold_xval,DatasetExperiment,metric-method |
Man page
|
| run,permutation_test,DatasetExperiment,metric-method |
Man page
|
| run,permute_sample_order,DatasetExperiment,metric-method |
Man page
|
| sb_corr |
Man page
Source code
|
| scale_colour_Publication |
Source code
|
| scale_fill_Publication |
Source code
|
| set_scale |
Source code
|
| split_data |
Man page
Source code
|
| stratified_split |
Man page
Source code
|
| structToolbox |
Man page
|
| svm_plot_2d |
Man page
Source code
|
| tSNE |
Man page
Source code
|
| tSNE_scatter |
Man page
Source code
|
| theme_Publication |
Source code
|
| ttest |
Man page
Source code
|
| unascale |
Source code
|
| uncenter_colmeans |
Source code
|
| var_nu |
Source code
|
| vec_norm |
Man page
Source code
|
| vips |
Source code
Source code
|
| wilcox_p_hist |
Man page
Source code
|
| wilcox_test |
Man page
Source code
|
