survcomp: Performance Assessment and Comparison for Survival Analysis

R package providing functions to assess and to compare the performance of risk prediction (survival) models.

AuthorBenjamin Haibe-Kains, Markus Schroeder, Catharina Olsen, Christos Sotiriou, Gianluca Bontempi, John Quackenbush
Date of publicationNone
MaintainerBenjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>, Markus Schroeder <markus.schroeder@ucdconnect.ie>, Catharina Olsen <colsen@ulb.ac.be>
LicenseArtistic-2.0
Version1.24.0
http://www.pmgenomics.ca/bhklab/

View on Bioconductor

Man pages

breastCancerData: Sample data containing six datasets for gene expression,...

censor.time: Function to artificially censor survival data

cindex.comp: Function to compare two concordance indices

cindex.comp.meta: Function to compare two concordance indices

combine.est: Function to combine estimates

combine.test: Function to combine probabilities

concordance.index: Function to compute the concordance index for survival or...

cvpl: Function to compute the CVPL

D.index: Function to compute the D index

dindex.comp: Function to compare two D indices

dindex.comp.meta: Function to compare two D indices

fisherz: Function to compute Fisher z transformation

forestplot.surv: Forest plots enables to display performance estimates of...

getsurv2: Function to retrieve the survival probabilities at a specific...

hazard.ratio: Function to estimate the hazard ratio through Cox regression

hr.comp: Function to statistically compare two hazard ratios

hr.comp2: Function to statistically compare two hazard ratios...

hr.comp.meta: Function to compare two concordance indices

iauc.comp: Function to compare two IAUCs through time-dependent ROC...

ibsc.comp: Function to compare two IBSCs

km.coxph.plot: Function to plot several Kaplan-Meier survival curves

logpl: Function to compute the log partial likelihood of a Cox model

mainz7g: Subset of MAINZ dataset containing gene expression,...

metaplot.surv: Meta-analysis plot (forest plot)

mrmr.cindex: Function to compute the concordance index for survival or...

mrmr.cindex.ensemble: Function to compute the concordance index for survival or...

nki7g: Subset of NKI dataset containing gene expression, annotations...

no.at.risk: Function to compute the number of individuals at risk

sbrier.score2proba: Function to compute the BSCs from a risk score, for all the...

score2proba: Function to compute the survival probabilities from a risk...

survcomp-package: Performance Assessment and Comparison for Survival Analysis

tdrocc: Function to compute time-dependent ROC curves

td.sens.spec: Function to compute sensitivity and specificity for a binary...

test.hetero.est: Function to test the heterogeneity of set of probabilities

test.hetero.test: Function to test the heterogeneity of set of probabilities

transbig7g: Subset of the TRANSBIG dataset containing gene expression,...

unt7g: Subset of UNT dataset containing gene expression, annotations...

upp7g: Subset of UPP dataset containing gene expression, annotations...

vdx7g: Subset of VDX dataset containing gene expression, annotations...

Files in this package

survcomp/DESCRIPTION
survcomp/NAMESPACE
survcomp/R
survcomp/R/D.index.R survcomp/R/censor.time.R survcomp/R/cindex.comp.R survcomp/R/cindex.comp.meta.R survcomp/R/combine.est.R survcomp/R/combine.test.R survcomp/R/concordance.index.R survcomp/R/cvpl.R survcomp/R/dindex.comp.R survcomp/R/dindex.comp.meta.R survcomp/R/extract.all.parents.R survcomp/R/fisherz.R survcomp/R/forestplot.surv.R survcomp/R/getsurv2.R survcomp/R/hazard.ratio.R survcomp/R/hr.comp.R survcomp/R/hr.comp.meta.R survcomp/R/hr.comp2.R survcomp/R/iauc.comp.R survcomp/R/ibsc.comp.R survcomp/R/km.coxph.plot.R survcomp/R/logpl.R survcomp/R/metaplot.surv.R survcomp/R/mrmr.cindex.R survcomp/R/mrmr.cindex.ensemble.R survcomp/R/no.at.risk.R survcomp/R/sbrier.score2proba.R survcomp/R/score2proba.R survcomp/R/td.sens.spec.R survcomp/R/tdrocc.R survcomp/R/test.hetero.est.R survcomp/R/test.hetero.test.R survcomp/R/zzz.R
survcomp/build
survcomp/build/survcomp.pdf
survcomp/build/vignette.rds
survcomp/data
survcomp/data/breastCancerData.RData
survcomp/inst
survcomp/inst/CITATION
survcomp/inst/doc
survcomp/inst/doc/survcomp.R
survcomp/inst/doc/survcomp.Rnw
survcomp/inst/doc/survcomp.pdf
survcomp/man
survcomp/man/D.index.Rd survcomp/man/breastCancerData.Rd survcomp/man/censor.time.Rd survcomp/man/cindex.comp.Rd survcomp/man/cindex.comp.meta.Rd survcomp/man/combine.est.Rd survcomp/man/combine.test.Rd survcomp/man/concordance.index.Rd survcomp/man/cvpl.Rd survcomp/man/dindex.comp.Rd survcomp/man/dindex.comp.meta.Rd survcomp/man/fisherz.Rd survcomp/man/forestplot.surv.Rd survcomp/man/getsurv2.Rd survcomp/man/hazard.ratio.Rd survcomp/man/hr.comp.Rd survcomp/man/hr.comp.meta.Rd survcomp/man/hr.comp2.Rd survcomp/man/iauc.comp.Rd survcomp/man/ibsc.comp.Rd survcomp/man/km.coxph.plot.Rd survcomp/man/logpl.Rd survcomp/man/mainz7g.Rd survcomp/man/metaplot.surv.Rd survcomp/man/mrmr.cindex.Rd survcomp/man/mrmr.cindex.ensemble.Rd survcomp/man/nki7g.Rd survcomp/man/no.at.risk.Rd survcomp/man/sbrier.score2proba.Rd survcomp/man/score2proba.Rd survcomp/man/survcomp-package.Rd survcomp/man/td.sens.spec.Rd survcomp/man/tdrocc.Rd survcomp/man/test.hetero.est.Rd survcomp/man/test.hetero.test.Rd survcomp/man/transbig7g.Rd survcomp/man/unt7g.Rd survcomp/man/upp7g.Rd survcomp/man/vdx7g.Rd
survcomp/src
survcomp/src/concordance.index.c
survcomp/src/foo_mrmr_ensemble_surv.cpp
survcomp/src/foo_mrmr_ensemble_surv.h
survcomp/src/foo_mrmr_surv.cpp
survcomp/src/mrmr_surv.h
survcomp/src/survcomp.h
survcomp/src/tree.h
survcomp/vignettes
survcomp/vignettes/survcomp.Rnw

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