Files in tofsims

Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

R/prcomp.R R/importers.R R/MNF.R R/RcppExports.R R/tofsims-package.R R/PCAnalysis.R R/AllGenericDefinition.R R/AllGetters.R R/MAF.R R/PeakList.R R/AllClassDefinition.R R/MassImage.R R/princomp.R R/AllSetters.R R/PCA.R R/MCR.R R/MassSpectra.R vignettes/workflow.Rmd man/points.Rd man/findClosestMatch.Rd man/MNF.Rd man/nPeaks.Rd man/PCA-class.Rd man/zdim-MassSpectra-method.Rd man/SNR.Rd man/calibration.Rd man/ndim.Rd man/RSS.Rd man/ctable.Rd man/scale.Rd man/addPeaks.Rd man/MAF.Rd man/coordToPixel-MassImage-numeric-method.Rd man/addFixedWidth.Rd man/EigenDecompose.Rd man/pcaLoadings.Rd man/getTOFs.Rd man/plot-MassImage-missing-method.Rd man/makeTIC-MassSpectra-method.Rd man/legend.col.Rd man/unitMassPeaks.Rd man/readBIF.Rd man/bwApply.Rd man/ndim-MassSpectra-method.Rd man/PCAnalysis.Rd man/MCR.Rd man/changePeakWidth.Rd man/ydim-MassImage-method.Rd man/extract.header.data.Rd man/MassImage.Rd man/subset.Rd man/plot-PeakList-missing-method.Rd man/PrComp.Rd man/noPlottingData.Rd man/imageMatrix.Rd man/coordToPixel.Rd man/poissonScaling.Rd man/analysisName.Rd man/calibPoints.Rd man/ydim.Rd man/dim-MassSpectra-method.Rd man/PrinComp.Rd man/show-MassSpectra-method.Rd man/overlayPlot.Rd man/plot.Rd man/smootherSpline.Rd man/parIndicesSearch.Rd man/recalibrate.Rd man/peakMzs.Rd man/peakPick.Rd man/nnMean.Rd man/mz.Rd man/itzipName-set.Rd man/RSS-MCR-method.Rd man/cReadRawPhi.Rd man/validPCAObject.Rd man/xySpec.Rd man/iters-MCR-method.Rd man/calibPointNew.Rd man/check.extension.Rd man/analysis.Rd man/ydim-PCA-method.Rd man/pcaMAF.Rd man/peakIDs.Rd man/binning.Rd man/nearestNeighbourMean.Rd man/xdim-set.Rd man/makeTIC.Rd man/LapackGenEigen.Rd man/computeNoise.Rd man/show-MassImage-method.Rd man/image.Rd man/look.for.itzip.property.Rd man/smootherGolay.Rd man/baseObject.Rd man/peaks2Spectra.Rd man/iters.Rd man/import.Rd man/validPeakListObject.Rd man/nnMNF.Rd man/resids.Rd man/baseObject-PrComp-method.Rd man/baseObject-PrinComp-method.Rd man/covDiffCalc.Rd man/xy.Rd man/show-PeakList-method.Rd man/removePeaks.Rd man/instrument.Rd man/import.raw.Rd man/manualSelectPeaks.Rd man/noPlottingData-PCA-method.Rd man/peakWidths.Rd man/pcaScores.Rd man/findPeakWidth.Rd man/smoothScatter.Rd man/tofsims-package.Rd man/dim-MassImage-method.Rd man/validMassImageObject.Rd man/xdim-MassImage-method.Rd man/MassSpectra.Rd man/reduceSpectrumResolution.Rd man/ydim-set.Rd man/xdim.Rd man/PeakList.Rd man/zdim.Rd man/resids-MCR-method.Rd man/nComp.Rd man/nz.Rd man/validMassSpectraObject.Rd man/xdim-PCA-method.Rd man/itzipName.Rd man/computeMNF.Rd tests/testthat.R tests/testthat/test_PCA.R tests/testthat/test_MassSpectra.R tests/testthat/test_MassImage.R tests/testthat/test_import.R inst/doc/workflow.Rmd inst/doc/workflow.R