trackViewer: A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

AuthorJianhong Ou, Yong-Xu Wang, Lihua Julie Zhu
Date of publicationNone
MaintainerJianhong Ou <jianhong.ou@umassmed.edu>
LicenseGPL (>= 2)
Version1.10.2

View on Bioconductor

Files in this package

trackViewer/DESCRIPTION
trackViewer/NAMESPACE
trackViewer/NEWS
trackViewer/R
trackViewer/R/GRoperator.R trackViewer/R/addArrowMark.R trackViewer/R/addGuideLine.R trackViewer/R/allclasses.R trackViewer/R/coverageGR.R trackViewer/R/dandelion.plot.R trackViewer/R/geneModelFromTxdb.R trackViewer/R/getHeight.R trackViewer/R/grid.dandelion.R trackViewer/R/grid.lollipop.R trackViewer/R/importBam.R trackViewer/R/importData.R trackViewer/R/importScore.R trackViewer/R/lollipop.plot.R trackViewer/R/optimizeStyle.R trackViewer/R/parse2GRanges.R trackViewer/R/parseWIG.R trackViewer/R/plotGRanges.R trackViewer/R/plotGeneModel.R trackViewer/R/plotLollipops.R trackViewer/R/plotTrack.R trackViewer/R/privateUtil.R trackViewer/R/viewTracks.R
trackViewer/build
trackViewer/build/vignette.rds
trackViewer/inst
trackViewer/inst/doc
trackViewer/inst/doc/trackViewer.R
trackViewer/inst/doc/trackViewer.Rmd
trackViewer/inst/doc/trackViewer.html
trackViewer/inst/extdata
trackViewer/inst/extdata/cpsf160.repA_+.wig
trackViewer/inst/extdata/cpsf160.repA_-.wig
trackViewer/inst/extdata/cpsf160.repB_+.wig
trackViewer/inst/extdata/cpsf160.repB_-.wig
trackViewer/inst/extdata/fox2.bed
trackViewer/inst/extdata/map-pin-red.xml
trackViewer/inst/extdata/methy.bed
trackViewer/inst/unitTests
trackViewer/inst/unitTests/test_coverage.R
trackViewer/man
trackViewer/man/GRoperator.Rd trackViewer/man/addArrowMark.Rd trackViewer/man/addGuideLine.Rd trackViewer/man/coverageGR.Rd trackViewer/man/dandelion.plot.Rd trackViewer/man/geneModelFromTxdb.Rd trackViewer/man/getCurTrackViewport.Rd trackViewer/man/importBam.Rd trackViewer/man/importData.Rd trackViewer/man/importScore.Rd trackViewer/man/lolliplot.Rd trackViewer/man/optimizeStyle.Rd trackViewer/man/parse2GRanges.Rd trackViewer/man/parseWIG.Rd trackViewer/man/plotGRanges.Rd trackViewer/man/pos.Rd
trackViewer/man/track.rd
trackViewer/man/trackList.Rd trackViewer/man/trackStyle.Rd trackViewer/man/trackViewer-package.Rd trackViewer/man/trackViewerStyle.Rd trackViewer/man/viewTracks.Rd trackViewer/man/xscale.Rd trackViewer/man/yaxisStyle.Rd
trackViewer/tests
trackViewer/tests/runTests.R
trackViewer/vignettes
trackViewer/vignettes/trackViewer.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.