getGeneIDsFromTxDb: get gene ids by genomic location
In trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
Description
Usage
Arguments
Value
Examples
View source: R/getGeneIDsFromTxDb.R
Description
retrieve gene ids from txdb object by genomic location.
Usage
1
getGeneIDsFromTxDb(gr, txdb)
Arguments
gr
GRanges object.
txdb
An object of TxDb.
Value
A character vector of gene ids
Examples
1
2
3
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
gr <- parse2GRanges("chr11:122,830,799-123,116,707")
ids <- getGeneIDsFromTxDb(gr, TxDb.Hsapiens.UCSC.hg19.knownGene)
trackViewer documentation built on Feb. 11, 2021, 2 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/getGeneIDsFromTxDb.R
Description
retrieve gene ids from txdb object by genomic location.
Usage
1 | getGeneIDsFromTxDb(gr, txdb)
|
Arguments
gr |
GRanges object. |
txdb |
An object of |
Value
A character vector of gene ids
Examples
1 2 3 | library(TxDb.Hsapiens.UCSC.hg19.knownGene)
gr <- parse2GRanges("chr11:122,830,799-123,116,707")
ids <- getGeneIDsFromTxDb(gr, TxDb.Hsapiens.UCSC.hg19.knownGene)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.