coverageGR: calculate coverage
In trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
Description
Usage
Arguments
Value
See Also
Examples
Description
calculate coverage for GRanges,
GAlignments or
GAlignmentPairs
Usage
1
coverageGR(gr)
Arguments
gr
an object of RGanges, GAlignments or GAlignmentPairs
Value
an object of GRanges
See Also
See Also as coverage,
coverage-methods
Examples
1
2
3
4
bed <- system.file("extdata", "fox2.bed", package="trackViewer",
mustWork=TRUE)
fox2 <- importScore(bed)
fox2$dat <- coverageGR(fox2$dat)
trackViewer documentation built on Feb. 11, 2021, 2 a.m.
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Description Usage Arguments Value See Also Examples
Description
calculate coverage for GRanges,
GAlignments or
GAlignmentPairs
Usage
1 | coverageGR(gr)
|
Arguments
gr |
an object of RGanges, GAlignments or GAlignmentPairs |
Value
an object of GRanges
See Also
See Also as coverage,
coverage-methods
Examples
1 2 3 4 | bed <- system.file("extdata", "fox2.bed", package="trackViewer",
mustWork=TRUE)
fox2 <- importScore(bed)
fox2$dat <- coverageGR(fox2$dat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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