getLocation: get genomic location by gene symbol

In trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

Description

given a gene name, get the genomic coordinates.

Usage

getLocation(symbol, txdb, org)

Arguments

symbol	Gene symbol
txdb	txdb will be used to extract the genes
org	org package name

Examples

library(TxDb.Hsapiens.UCSC.hg19.knownGene)
library(org.Hs.eg.db)
getLocation("HSPA8", TxDb.Hsapiens.UCSC.hg19.knownGene, "org.Hs.eg.db")

trackViewer documentation built on Feb. 11, 2021, 2 a.m.