tspplot: Graphical display of tsp objects

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/tsp.R

Description

Graphical display of tsp objects

Usage

1
  tspplot(tspobj)

Arguments

tspobj

A tsp object.

Details

tspplot() creates a plot of each top scoring pair.The figure plots the expression for the first gene in the TSP pair versus the expression for the second gene in the TSP pair across arrays. The user defined groups are plotted in the colors red and blue. The score for the pair is shown across the top of each plot. If there is more than one TSP, hitting return will cycle from one TSP to the next.

Value

Nothing of interest.

Author(s)

Jeffrey T. Leek jtleek@jhu.edu

References

D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying gene expression profiles from pairwise mRNA comparisons, Statist. Appl. in Genetics and Molecular Biology, 3, 2004.

See Also

tspcalc, ts.pair, tspsig,predict.tsp, summary.tsp

Examples

1
2
3
4
5
6
7
  ## Not run: 
  ## Load data
  data(tspdata) 
  tsp1 <- tspcalc(dat,grp)
  tspplot(tsp1)
 
## End(Not run)

tspair documentation built on May 31, 2017, 2:55 p.m.

Search within the tspair package
Search all R packages, documentation and source code