Biocview "RNAseq"

spliceSites

A bioconductor package for exploration of alignment gap positions from RNA-seq data

wokai/spliceSites

A bioconductor package for exploration of alignment gap positions from RNA-seq data

cummeRbund

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

shiauck/cummeRbund_on_RSQLite2.0

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

gofflab/cummeRbund-BioC-Bridge

Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.

arlston/MeTPeak

A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data

pathview

a tool set for pathway based data integration and visualization

compgenomics/MeTDiff

Differential analysis for MeRIP-seq data

arlston/MeTDiff

Differential analysis for MeRIP-seq data

RamsinghLab/arkasData_staging

Example data for the `arkas` package

RamsinghLab/arkasData

Example data for the `arkas` package

ttriche/artemisData

Example data for the `artemis` package

arcolombo/sleuthData

Example data for the `sleuth` package

exomePeak

exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis

lzcyzm/exomePeak

exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis

roar

Identify differential APA usage from RNA-seq alignments

vodkatad/roar

Identify differential APA usage from RNA-seq alignments

metaRNASeq

Meta-Analysis of RNA-Seq Data

metaRNASeq

Meta-Analysis of RNA-Seq Data

vqf/ciberAMP

mRNA and copy number data integrative algorithm.

rikenbit/fuchikoma

Revealing differentially expressed genes using nonlinear dimensionality reduction for single cell RNA-Seq data

rikenbit/FUCHIKOMA

Revealing differentially expressed genes using nonlinear dimensionality reduction for single cell RNA-Seq data

valery-sherina/TaqManRNAseq_project

RNAseq and qPCR signal comparison

sRAP

Simplified RNA-Seq Analysis Pipeline

lzcyzm/Travis_Dev

Transcriptomic View of Genomic Features

lzcyzm/Travis

Transcriptomic View of Genomic Features

LieberInstitute/brainstorm_package

Validating Sample Identiy Through RNA-seq and DNA Genotyping Correlation

LieberInstitute/brainstorm

Validating Sample Identiy Through RNA-seq and DNA Genotyping Correlation

joshstolz/brainstorm

Validating Sample Identiy Through RNA-seq and DNA Genotyping Correlation