GMT: Read and Write GMT files

Description Usage Arguments Format Details Value Examples

Description

Functions to read and write Gene Matrix Transposed (GMT) files and to test if an object inherits from GMT.

Usage

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read.GMT(filename)

write.GMT(gmt, filename)

is.GMT(x)

Arguments

filename

Location of the gmt file.

gmt

A GMT object.

x

The object to test.

Format

A GMT object is a named list of terms, where each term is a list with the items:

id

The term ID.

name

The full name or description of the term.

genes

A character vector of genes annotated to this term.

Details

A GMT file describes gene sets, such as biological terms and pathways. GMT files are tab delimited text files. Each row of a GMT file contains a single term with its database ID and a term name, followed all genes annotated to the term.

Value

read.GMT returns a GMT object.
write.GMT returns NULL.
is.GMT returns TRUE if x is a GMT object, else FALSE.

Examples

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  fname_GMT <- system.file("extdata", "hsapiens_REAC_subset.gmt", package = "ActivePathways")
  gmt <- read.GMT(fname_GMT)
  gmt[1:10]
  gmt[[1]]
  gmt[[1]]$id
  gmt[[1]]$genes
  gmt[[1]]$name
  gmt$`REAC:1630316`

Example output

REAC:1630316 - Glycosaminoglycan metabolism 
 ST3GAL1, CHP1, B4GALT5, ST3GAL4, SLC9A1, CHST11, B3GAT3, SLC26A1, ARSB, ABCC5, LUM, PAPSS1, SDC4, NAGLU, AC022400.6, HYAL1, NDST3, SLC35B2, B3GAT1, CHST2, DCN, CEMIP, IDS, IDUA, HS3ST3B1, B3GNT7, CHST12, CHST14, BCAN, B4GALT3, HS3ST1, B4GALT1, CSPG4, CHPF2, HEXB, UST, XYLT1, NDST2, AL050331.3, NAT6, CHSY3, NCAN, FMOD, B3GNT2, HPSE, ACAN, LYVE1, GPC2, GPC1, B4GALT2, SLC35B3, KERA, GPC4, GUSB, HYAL3, HS6ST3, HAS3, CHPF, OMD, SDC2, B3GNT3, CSGALNACT2, CSPG5, BGN, CHST6, HS6ST2, SDC3, HS2ST1, CD44, AGRN, B3GALT6, PRELP, GLB1, GPC6, B3GNT4, PAPSS2, HS3ST4, CHST9, GNS, CHST1, CSGALNACT1, HS6ST1, CHST7, AL590542.1, HYAL2, HAS1, CHSY1, OGN, B4GAT1, B4GALT4, DSEL, EXT1, SDC1, SLC35D2, EXT2, ST3GAL2, ST3GAL6, CHST3, CHST5, HSPG2, SLC26A2, HEXA, XYLT2, HS3ST6, HS3ST5, GLCE, AC244197.3, B4GALT7, HAS2, NDST4, CHST15, B4GALT6, B3GAT2, STAB2, HMMR, ST3GAL3, VCAN, NDST1, HS3ST2, GPC5, HS3ST3A1, HPSE2, GLB1L, SGSH, GPC3, CHST13, DSE 

 REAC:5633007 - Regulation of TP53 Activity 
 PPP1R13L, RFC3, SGK1, HDAC1, SETD9, RPA3, CSNK2A2, EHMT1, PDPK1, CCNG1, TAF6, ING5, TP53INP1, BRCA1, TAF1, TAF9, EHMT2, RBBP8, CHD4, USP2, BRPF1, BANP, PPP2R5C, SSRP1, TAF4, TMEM55B, PPP1R13B, TAF10, PRR5, ATM, ZNF385A, MRE11, PIP4K2C, SMYD2, BARD1, MBD3, TP53BP2, AURKA, RPA1, KAT6A, CHD3, ATR, EXO1, PIN1, RMI2, PRKAB2, AKT2, PPP2CA, TAF13, RAD9B, PPP2CB, MDM4, POU4F1, TAF4B, MDM2, BRD1, CDK2, CSNK2B, PIP4K2A, RAD50, PML, AKT3, RAD1, USP7, PRDM1, RFC4, MTOR, POU4F2, RFC2, KMT5A, DNA2, NUAK1, PIP4K2B, MAPKAP1, PPP2R1A, RBBP7, MTA2, TP53RK, TAF1L, GATAD2B, JMY, TAF12, CDK5R1, RICTOR, PHF20, AC134772.2, STK11, TAF3, BLM, ATRIP, TAF7L, TP73, MAP2K6, RPA2, PRKAG1, TOPBP1, PRKAB1, TOP3A, CCNA1, RBBP4, PPP2R1B, DAXX, TTC5, CHEK2, CDK5, RMI1, TAF2, NOC2L, TP63, CSNK2A1, UBB, PRKAG2, ING2, RNF34, MLST8, HIPK2, TBP, L3MBTL1, EP300, MAPK11, BRIP1, PRMT5, PRKAG3, RFC5, NBN, TPX2, HDAC2, CDK1, MAPKAPK5, CHEK1, TAF5, BRPF3, RPS27A, AKT1, GATAD2A, RHNO1, CCNA2, HUS1, MEAF6, PRKAA1, CDKN2A, RAD17, KAT5, SUPT16H, TAF7, PLK3, UBA52, WRN, MAPK14, TAF9B, UBC, HIPK1, TP53, DYRK2, RFFL, TAF11, BRD7, RAD9A, AURKB, PRKAA2 

 REAC:5358346 - Hedgehog ligand biogenesis 
 PSMB11, PSMD8, PSMB6, PSMB8, PSMD13, PSMA2, PSMB3, PSMB7, PSME2, PSMD1, PSMA8, PSMA1, PSMD2, PSMD14, PSMC1, IHH, SEL1L, SCUBE2, PSMB10, PSMD10, PSMA5, PSMD3, PSMC2, PSMC6, PSME1, PSME4, PSMC4, AC010132.3, PSMD5, UBB, GPC5, PSMA7, PSMB2, PSMD9, SEM1, PSMA3, DISP2, PSMB9, PSMD6, OS9, PSMC3, PSMA6, RPS27A, ADAM17, PSMB1, DHH, PSMF1, HHAT, UBA52, UBC, DERL2, PSMD4, VCP, ERLEC1, PSME3, PSMB4, P4HB, PSMA4, PSMD7, PSMD11, PSMC5, NOTUM, PSMD12, PSMB5, SYVN1, SHH 

 REAC:1500931 - Cell-Cell communication 
 ANG, NCK1, CDH11, CASK, FYB, PARVA, SDK2, CDH24, PARD6A, DSCAML1, ARHGEF6, NCK2, CLDN17, PATJ, PTPN6, PAK1, ITGA6, CDH2, CLDN3, CLDN9, CLDN18, CDH6, PXN, PARD6G, NTN1, LIMS1, JUP, MAPK13, NECTIN3, CTNNA1, ACTN1, CDH13, CLDN20, CTNND1, PTK2, PARVB, ACTN3, CLDN5, SIRPG, CLDN2, PTPN11, NPHS1, LIMS2, CDH12, CLDN8, CRB3, KIRREL3, SIRPB1, PIK3R1, CLDN23, SPTAN1, PLEC, CADM3, CLDN1, CLDN22, TYROBP, SDK1, VASP, LAMA3, MAPK12, TESK1, PIK3CB, CLDN12, PIK3R2, CLDN11, PARD6B, DSCAM, ITGB1, CLDN6, NECTIN4, CDH10, CLDN7, PRKCI, CLDN19, CDH1, ACTN2, PTK2B, CDH3, SKAP2, IQGAP1, FERMT2, CDH5, MAPK8, CADM1, ILK, SIRPA, MAPK11, CLDN15, DST, WASL, PIK3CA, CDH9, FBLIM1, LAMB3, CLDN4, PVR, SRC, CD47, RNASE1, MAGI2, MAPK14, CD151, SPTBN1, AFDN, GRB2, FLNC, FLNA, CDH7, CDH8, NECTIN1, CLDN14, CLDN10, NECTIN2, MPP5, ACTN4, DCC, CDH17, RSU1, CDH18, CLDN16, KIRREL, CADM2, FYN, CD2AP, PARD3, LAMC2, COL17A1, CTNNB1, F11R, CDH15, ITGB4, KIRREL2, RAC1, CDH4 

 REAC:192456 - Digestion of dietary lipid 
 CLPS, PNLIP, PNLIPRP1, LIPF, CEL, PNLIPRP3, PNLIPRP2 

 REAC:2424491 - DAP12 signaling 
 IL17RD, PSMC1, PDGFRB, PSMD14, TNRC6C, CD80, DUSP10, SPTBN4, PIP5K1B, NRG1, TNRC6A, FGF22, ADCY5, CHUK, PSME2, CUL3, NRG2, PSMB8, PSMA2, PSMB3, PSMD13, AC010132.3, PIK3CB, FGF18, PRKCE, FN1, SHC2, RBX1, PSMD5, FGF19, NF1, ARRB1, FGFR1, PRKACG, FGB, PSME1, VAV1, PSMD3, ITGA2B, HBEGF, ERBB3, FGF3, KSR2, PPP2R5C, VAV3, PPP2CB, IL5RA, PSMB9, CDKN1B, RASA2, PPP2R5E, PIK3AP1, PSMF1, FOXO4, PSMC3, PSMA6, AL358075.4, FGF2, ICOS, IL2RB, BTC, ADCY2, RAPGEF2, CDKN1A, DUSP6, ERBB4, PTK2, MET, FGA, TSC2, NRAS, SPTB, SPRED3, TNRC6B, FOXO3, GSK3A, FGF1, IL3RA, PIP5K1A, IL2RA, GFRA4, PSMD1, TEK, RICTOR, PSMD10, CASP9, CAMK2G, RASAL3, PPP2R1A, PSMB6, FGF6, IL3, MAPKAP1, SYK, CNKSR1, RASGRF2, GRIN2C, PSMB7, CD86, ADCY3, TLN1, PSMC4, HRAS, MLST8, VAV2, LAMTOR2, THEM4, DUSP7, RASGRF1, CALM3, RAP1B, PSMC2, KSR1, RAC1, ADCY1, JAK1, SPRED2, PDE1A, FGF10, PSME4, EGF, PDE1B, GRIN2A, IRS2, VWF, PIK3CD, FGFR4, PHB, AKT1, IQGAP1, PTPRA, PSMB1, PRKAR1B, KL, PRKCD, PSMD9, PSMB2, EGFR, MAP2K2, PRKAR2B, KRAS, CAMK2D, SRC, PIK3CA, NRTN, IL2, CAMK2B, KIT, CSF2RA, CSK, UBC, SPTBN1, RASA4, CD19, DUSP2, LAMTOR3, ADCY4, PHLPP2, ARAF, PSMD2, PDGFB, PSMA8, FGFR3, NEFL, TRAT1, MIR26A2, FGF23, AGO3, PTPN11, PSMB10, GAB1, MAPK1, TREM2, PRKAR2A, LCK, ADCY6, SPRED1, MIR26A1, SPTAN1, PSMB11, PDPK1, ITPR3, KBTBD7, RET, PSMD8, FGG, GFRA1, AHCYL1, FOXO1, PIK3R1, RASGEF1A, JAK2, B2M, FGF20, PIK3R2, FGF4, RASAL1, FGF7, PIP4K2C, PDGFA, PRR5, TYROBP, EREG, PPP2R5B, GRAP2, SOS1, DUSP8, PRKACA, RASA1, PSMA5, DUSP4, PRKCA, ADCY7, CSF2, DUSP16, PHLPP1, CAMK4, KLB, GDNF, AKT2, CREB1, PPP2CA, FGF8, FGF9, ITPR2, BAD, PAQR3, SYNGAP1, APBB1IP, SEM1, RPS6KB2, AKT1S1, PPP5C, PLCG1, PSMA7, SHC1, ARTN, PRKCG, PSMA3, KITLG, GRK2, AKAP9, ANGPT1, FGF17, MTOR, PDE1C, GRIN2B, NR4A1, ITGB3, PSMC5, AGO1, KLRD1, BRAF, AKT3, PSMD4, PIP4K2A, TRIB3, RASA3, MDM2, PSMA4, SPTBN2, DAB2IP, DUSP5, PSMB4, PSMA1, MAPK3, KLRK1, GSK3B, PDGFRA, CAMK2A, VCL, GFRA2, ITPR1, KLRC2, LCP2, ERBB2, GRIN1, GRB2, LAT, RAF1, SPTA1, RANBP9, PIP4K2B, FRS3, INS-IGF2, RASGRP3, SHC3, IER3, INSR, BRAP, PEBP1, CD28, GRIN2D, FYN, YWHAB, IL5, AGO4, UBB, FGF16, IL2RG, FGF5, PSMC6, IRS1, PPP2R1B, ARRB2, MARK3, BTK, PLCG2, RAP1A, PEA15, PSMD6, ADCY8, JAK3, SPTBN5, ACTN2, PPP2R5A, MAP3K11, DUSP1, DUSP9, RPS27A, CSF2RB, HLA-E, AL672043.1, RASAL2, CALM1, PIK3R3, FRS2, PRKAR1A, ADCY9, FGFR2, DLG4, PPP2R5D, CNKSR2, NCAM1, RASGRP4, PSMD12, PSMB5, TP53, WDR83, NRG4, PRKACB, MAP2K1, MOV10, PIP5K1C, NRG3, CALM2, PTEN, UBA52, PSMD7, RNASE1, PSPN, GFRA3, PSMD11, INS, RASGRP1, AGO2, HGF, PSME3 

 REAC:1221632 - Meiotic synapsis 
 HIST1H4K, HIST1H4J, HIST1H2BM, UBE2I, H2AFV, HIST1H2BL, DIDO1, FKBP6, HIST1H2AE, HIST1H2BN, H2BFS, HIST1H4C, BRCA1, SMC3, HIST2H2AA3, REC8, SYCP3, HIST1H4E, TERF2IP, HIST1H2BK, HIST1H2AC, HIST1H2BB, RAD21, SYCE2, HIST1H2BH, HIST1H2BD, HIST1H2BJ, TINF2, HIST1H4L, HIST2H2AA4, SYCP2, HIST1H2AD, HIST2H2AC, TERF1, SUN1, HIST1H4F, H2AFZ, H2AFX, HIST1H4I, HIST1H4B, HIST4H4, HIST1H2BG, LMNA, HIST2H2BE, SYNE2, STAG1, HIST1H2BF, HIST1H4A, HIST2H4A, H2AFJ, STAG2, HIST1H2BE, H2AFB1, HIST1H2BO, TERF2, SMC1B, ATR, POT1, HIST1H2AB, HIST1H2BC, HIST1H2BA, HIST3H2BB, STAG3, HIST1H4D, HIST2H4B, SYCE3, HIST1H4H, HIST1H2AJ, LMNB1, SUN2, SYCE1, HSPA2, TEX12, HIST1H2BI, ACD, HIST3H3, SYNE1, SYCP1, SMC1A 

 REAC:114608 - Platelet degranulation  
 THBS1, FERMT3, TLN1, SERPING1, POTEKP, SPARC, SCCPDH, PPIA, CALM3, PCYOX1L, PROS1, SERPINA4, MANF, PPBP, CLEC3B, TUBA4A, EGF, A2M, ORM2, VCL, VEGFC, FLNA, HRG, APOH, RAB27B, TGFB2, SELP, LEFTY2, ACTN4, ISLR, VEGFA, APOA1, A1BG, CFL1, SELENOP, SYTL4, QSOX1, PCDH7, TEX264, HSPA5, ANXA5, CFD, CALM2, GTPBP2, TGFB3, PLG, RARRES2, CD9, HGF, PHACTR2, SCG3, VTI1B, ORM1, APLP2, VWF, ACTN2, SOD1, SERPINA1, CLU, BRPF3, APP, ITIH4, CALM1, TF, TAGLN2, PFN1, SERPINA3, ALDOA, CHID1, STXBP2, MMRN1, IGF1, CD36, FN1, PDGFA, TOR4A, TIMP3, MAGED2, CD63, F8, LAMP2, LHFPL2, FGB, PLEK, ITGA2B, SERPINE1, PECAM1, CD109, HABP4, ALB, CTSW, NHLRC2, PDGFB, CAP1, F5, ABCC4, F13A1, OLA1, LY6G6F, FAM3C, PSAP, IGF2, AHSG, FGG, CALU, ECM1, SERPINF2, FAM49B, TIMP1, ACTN1, CDC37L1, LGALS3BP, FGA, ITGB3, TMSB4X, ENDOD1, APOOL, ITIH3, TGFB1, TTN, SPP2, VEGFD, TMX3, CYB5R1, GAS6, SRGN, WDR1, KNG1, PF4, VEGFB 

 REAC:5694530 - Cargo concentration in the ER 
 FOLR1, SAR1B, LMAN2L, CTAGE5, COL7A1, LMAN1, SEC24B, GOSR2, CNIH2, PREB, F8, LMAN2, TMED10, SEC23A, CD59, SEC24D, CTSC, CNIH3, MCFD2, STX5, MIA3, TGFA, CNIH1, GRIA1, SEC24A, SERPINA1, SEC24C, AREG, SEC22B, F5, TMED2, LMAN1L, AL132639.3, CTSZ 

 REAC:5620924 - Intraflagellar transport 
 DYNLRB2, IFT27, KIFAP3, IFT122, IFT140, KIF3B, KIF3C, IFT172, CLUAP1, DYNLL1, IFT88, IFT81, TTC30B, WDR34, IFT80, IFT20, DYNC2H1, WDR19, IFT57, DYNLRB1, HSPB11, DYNC2LI1, IFT43, IFT46, TCTE3, TCTEX1D2, TRAF3IP1, WDR35, IFT74, TCTEX1D1, KIF17, DYNLL2, TRIP11, TTC21B, WDR60, IFT22, KIF3A, TTC30A, IFT52, TTC26, TNPO1 

$id
[1] "REAC:1630316"

$name
[1] "Glycosaminoglycan metabolism"

$genes
  [1] "ST3GAL1"    "CHP1"       "B4GALT5"    "ST3GAL4"    "SLC9A1"    
  [6] "CHST11"     "B3GAT3"     "SLC26A1"    "ARSB"       "ABCC5"     
 [11] "LUM"        "PAPSS1"     "SDC4"       "NAGLU"      "AC022400.6"
 [16] "HYAL1"      "NDST3"      "SLC35B2"    "B3GAT1"     "CHST2"     
 [21] "DCN"        "CEMIP"      "IDS"        "IDUA"       "HS3ST3B1"  
 [26] "B3GNT7"     "CHST12"     "CHST14"     "BCAN"       "B4GALT3"   
 [31] "HS3ST1"     "B4GALT1"    "CSPG4"      "CHPF2"      "HEXB"      
 [36] "UST"        "XYLT1"      "NDST2"      "AL050331.3" "NAT6"      
 [41] "CHSY3"      "NCAN"       "FMOD"       "B3GNT2"     "HPSE"      
 [46] "ACAN"       "LYVE1"      "GPC2"       "GPC1"       "B4GALT2"   
 [51] "SLC35B3"    "KERA"       "GPC4"       "GUSB"       "HYAL3"     
 [56] "HS6ST3"     "HAS3"       "CHPF"       "OMD"        "SDC2"      
 [61] "B3GNT3"     "CSGALNACT2" "CSPG5"      "BGN"        "CHST6"     
 [66] "HS6ST2"     "SDC3"       "HS2ST1"     "CD44"       "AGRN"      
 [71] "B3GALT6"    "PRELP"      "GLB1"       "GPC6"       "B3GNT4"    
 [76] "PAPSS2"     "HS3ST4"     "CHST9"      "GNS"        "CHST1"     
 [81] "CSGALNACT1" "HS6ST1"     "CHST7"      "AL590542.1" "HYAL2"     
 [86] "HAS1"       "CHSY1"      "OGN"        "B4GAT1"     "B4GALT4"   
 [91] "DSEL"       "EXT1"       "SDC1"       "SLC35D2"    "EXT2"      
 [96] "ST3GAL2"    "ST3GAL6"    "CHST3"      "CHST5"      "HSPG2"     
[101] "SLC26A2"    "HEXA"       "XYLT2"      "HS3ST6"     "HS3ST5"    
[106] "GLCE"       "AC244197.3" "B4GALT7"    "HAS2"       "NDST4"     
[111] "CHST15"     "B4GALT6"    "B3GAT2"     "STAB2"      "HMMR"      
[116] "ST3GAL3"    "VCAN"       "NDST1"      "HS3ST2"     "GPC5"      
[121] "HS3ST3A1"   "HPSE2"      "GLB1L"      "SGSH"       "GPC3"      
[126] "CHST13"     "DSE"       

[1] "REAC:1630316"
  [1] "ST3GAL1"    "CHP1"       "B4GALT5"    "ST3GAL4"    "SLC9A1"    
  [6] "CHST11"     "B3GAT3"     "SLC26A1"    "ARSB"       "ABCC5"     
 [11] "LUM"        "PAPSS1"     "SDC4"       "NAGLU"      "AC022400.6"
 [16] "HYAL1"      "NDST3"      "SLC35B2"    "B3GAT1"     "CHST2"     
 [21] "DCN"        "CEMIP"      "IDS"        "IDUA"       "HS3ST3B1"  
 [26] "B3GNT7"     "CHST12"     "CHST14"     "BCAN"       "B4GALT3"   
 [31] "HS3ST1"     "B4GALT1"    "CSPG4"      "CHPF2"      "HEXB"      
 [36] "UST"        "XYLT1"      "NDST2"      "AL050331.3" "NAT6"      
 [41] "CHSY3"      "NCAN"       "FMOD"       "B3GNT2"     "HPSE"      
 [46] "ACAN"       "LYVE1"      "GPC2"       "GPC1"       "B4GALT2"   
 [51] "SLC35B3"    "KERA"       "GPC4"       "GUSB"       "HYAL3"     
 [56] "HS6ST3"     "HAS3"       "CHPF"       "OMD"        "SDC2"      
 [61] "B3GNT3"     "CSGALNACT2" "CSPG5"      "BGN"        "CHST6"     
 [66] "HS6ST2"     "SDC3"       "HS2ST1"     "CD44"       "AGRN"      
 [71] "B3GALT6"    "PRELP"      "GLB1"       "GPC6"       "B3GNT4"    
 [76] "PAPSS2"     "HS3ST4"     "CHST9"      "GNS"        "CHST1"     
 [81] "CSGALNACT1" "HS6ST1"     "CHST7"      "AL590542.1" "HYAL2"     
 [86] "HAS1"       "CHSY1"      "OGN"        "B4GAT1"     "B4GALT4"   
 [91] "DSEL"       "EXT1"       "SDC1"       "SLC35D2"    "EXT2"      
 [96] "ST3GAL2"    "ST3GAL6"    "CHST3"      "CHST5"      "HSPG2"     
[101] "SLC26A2"    "HEXA"       "XYLT2"      "HS3ST6"     "HS3ST5"    
[106] "GLCE"       "AC244197.3" "B4GALT7"    "HAS2"       "NDST4"     
[111] "CHST15"     "B4GALT6"    "B3GAT2"     "STAB2"      "HMMR"      
[116] "ST3GAL3"    "VCAN"       "NDST1"      "HS3ST2"     "GPC5"      
[121] "HS3ST3A1"   "HPSE2"      "GLB1L"      "SGSH"       "GPC3"      
[126] "CHST13"     "DSE"       
[1] "Glycosaminoglycan metabolism"
$id
[1] "REAC:1630316"

$name
[1] "Glycosaminoglycan metabolism"

$genes
  [1] "ST3GAL1"    "CHP1"       "B4GALT5"    "ST3GAL4"    "SLC9A1"    
  [6] "CHST11"     "B3GAT3"     "SLC26A1"    "ARSB"       "ABCC5"     
 [11] "LUM"        "PAPSS1"     "SDC4"       "NAGLU"      "AC022400.6"
 [16] "HYAL1"      "NDST3"      "SLC35B2"    "B3GAT1"     "CHST2"     
 [21] "DCN"        "CEMIP"      "IDS"        "IDUA"       "HS3ST3B1"  
 [26] "B3GNT7"     "CHST12"     "CHST14"     "BCAN"       "B4GALT3"   
 [31] "HS3ST1"     "B4GALT1"    "CSPG4"      "CHPF2"      "HEXB"      
 [36] "UST"        "XYLT1"      "NDST2"      "AL050331.3" "NAT6"      
 [41] "CHSY3"      "NCAN"       "FMOD"       "B3GNT2"     "HPSE"      
 [46] "ACAN"       "LYVE1"      "GPC2"       "GPC1"       "B4GALT2"   
 [51] "SLC35B3"    "KERA"       "GPC4"       "GUSB"       "HYAL3"     
 [56] "HS6ST3"     "HAS3"       "CHPF"       "OMD"        "SDC2"      
 [61] "B3GNT3"     "CSGALNACT2" "CSPG5"      "BGN"        "CHST6"     
 [66] "HS6ST2"     "SDC3"       "HS2ST1"     "CD44"       "AGRN"      
 [71] "B3GALT6"    "PRELP"      "GLB1"       "GPC6"       "B3GNT4"    
 [76] "PAPSS2"     "HS3ST4"     "CHST9"      "GNS"        "CHST1"     
 [81] "CSGALNACT1" "HS6ST1"     "CHST7"      "AL590542.1" "HYAL2"     
 [86] "HAS1"       "CHSY1"      "OGN"        "B4GAT1"     "B4GALT4"   
 [91] "DSEL"       "EXT1"       "SDC1"       "SLC35D2"    "EXT2"      
 [96] "ST3GAL2"    "ST3GAL6"    "CHST3"      "CHST5"      "HSPG2"     
[101] "SLC26A2"    "HEXA"       "XYLT2"      "HS3ST6"     "HS3ST5"    
[106] "GLCE"       "AC244197.3" "B4GALT7"    "HAS2"       "NDST4"     
[111] "CHST15"     "B4GALT6"    "B3GAT2"     "STAB2"      "HMMR"      
[116] "ST3GAL3"    "VCAN"       "NDST1"      "HS3ST2"     "GPC5"      
[121] "HS3ST3A1"   "HPSE2"      "GLB1L"      "SGSH"       "GPC3"      
[126] "CHST13"     "DSE"       

ActivePathways documentation built on July 10, 2020, 1:12 a.m.