export_as_CSV: Export the results from ActivePathways as a comma-separated...

In ActivePathways: Integrative Pathway Enrichment Analysis of Multivariate Omics Data

Export the results from ActivePathways as a comma-separated values (CSV) file.

Description

Export the results from ActivePathways as a comma-separated values (CSV) file.

Usage

export_as_CSV(res, file_name)

Arguments

res	the data.table object with ActivePathways results.
file_name	location and name of the CSV file to write to.

Examples

    fname_scores <- system.file("extdata", "Adenocarcinoma_scores_subset.tsv", 
         package = "ActivePathways")
    fname_GMT = system.file("extdata", "hsapiens_REAC_subset.gmt",
         package = "ActivePathways")

    dat <- as.matrix(read.table(fname_scores, header = TRUE, row.names = 'Gene'))
    dat[is.na(dat)] <- 1

    res <- ActivePathways(dat, fname_GMT)

    export_as_CSV(res, "results_ActivePathways.csv")

ActivePathways documentation built on Sept. 11, 2024, 8:45 p.m.