hypergeometric: Hypergeometric test
In ActivePathways: Integrative Pathway Enrichment Analysis of Multivariate Omics Data
View source: R/statistical_tests.r
hypergeometric R Documentation
Hypergeometric test
Description
Perform a hypergeometric test, also known as the Fisher's exact test, on a 2x2 contingency
table with the alternative hypothesis set to 'greater'. In this application, the test finds the
probability that counts[1, 1] or more genes would be found to be annotated to a term (pathway),
assuming the null hypothesis of genes being distributed randomly to terms.
Usage
hypergeometric(counts)
Arguments
counts
A 2x2 numerical matrix representing a contingency table.
Value
a p-value of enrichment of genes in a term or pathway.
ActivePathways documentation built on Sept. 11, 2024, 8:45 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/statistical_tests.r
| hypergeometric | R Documentation |
Hypergeometric test
Description
Perform a hypergeometric test, also known as the Fisher's exact test, on a 2x2 contingency table with the alternative hypothesis set to 'greater'. In this application, the test finds the probability that counts[1, 1] or more genes would be found to be annotated to a term (pathway), assuming the null hypothesis of genes being distributed randomly to terms.
Usage
hypergeometric(counts)
Arguments
counts |
A 2x2 numerical matrix representing a contingency table. |
Value
a p-value of enrichment of genes in a term or pathway.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.