makeBackground: Make a background list of genes (i.e., the statistical...
In ActivePathways: Integrative Pathway Enrichment Analysis of Multivariate Omics Data
makeBackground R Documentation
Make a background list of genes (i.e., the statistical universe) based on all the terms (gene sets, pathways) considered.
Description
Returns A character vector of all genes in a GMT object.
Usage
makeBackground(gmt)
Arguments
gmt
A GMT object.
Value
A character vector containing all genes in GMT.
Examples
fname_GMT <- system.file("extdata", "hsapiens_REAC_subset.gmt", package = "ActivePathways")
gmt <- read.GMT(fname_GMT)
makeBackground(gmt)[1:10]
ActivePathways documentation built on Nov. 2, 2023, 5:12 p.m.
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| makeBackground | R Documentation |
Make a background list of genes (i.e., the statistical universe) based on all the terms (gene sets, pathways) considered.
Description
Returns A character vector of all genes in a GMT object.
Usage
makeBackground(gmt)
Arguments
gmt |
A GMT object. |
Value
A character vector containing all genes in GMT.
Examples
fname_GMT <- system.file("extdata", "hsapiens_REAC_subset.gmt", package = "ActivePathways")
gmt <- read.GMT(fname_GMT)
makeBackground(gmt)[1:10]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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