plotCodonSpecificParameters: Plot Codon Specific Parameter

In AnaCoDa: Analysis of Codon Data under Stationarity using a Bayesian Framework

Description

Plots a codon-specific set of traces, specified with the type parameter.

Usage

plotCodonSpecificParameters(
  trace,
  mixture,
  type = "Mutation",
  main = "Mutation Parameter Traces",
  ROC.or.FONSE = TRUE,
  log.10.scale = F
)

Arguments

trace	An Rcpp trace object initialized with initializeTraceObject.
mixture	The mixture for which to plot values.
type	A string containing one of the following to graph: Mutation, Selection, Alpha, LambdaPrime, MeanWaitingTime, VarWaitingTime.
main	The title of the plot.
ROC.or.FONSE	A logical value determining if the Parameter was ROC/FONSE or not.
log.10.scale	A logical value determining if figures should be plotted on the log.10.scale (default=F). Should not be applied to mutation and selection parameters estimated by ROC/FONSE.

Value

This function has no return value.

AnaCoDa documentation built on Jan. 8, 2021, 2:37 a.m.