Description Usage Arguments Details Value See Also
The generic function getPhenotype
implements an identification of organism phenotypes.
1 2 3 4 | getPhenotype(object, cutoff = 1e-06, fbasol, par = FALSE)
## S4 method for signature 'Organism'
getPhenotype(object, cutoff = 1e-06, fbasol, par = FALSE)
|
object |
An object of class Organisms. |
cutoff |
A number giving the cutoff value by which value of objective function is considered greater than 0. |
fbasol |
Problem object according to the constraints and then solved with |
par |
A boolean indicating if running in parallel mode. |
The phenotypes are defined by flux through exchange reactions, which indicate potential differential substrate usages. Uptake of substances is indicated by a negative and production of substances by a positive number.
Returns the phenotype of the organisms where the uptake of substances is indicated by a negative and production of substances by a positive number
Organism-class
, checkPhen
and minePheno
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