lysis: Lysis function of organismal cells by adding...

In BacArena: Modeling Framework for Cellular Communities in their Environments

Description

The generic function lysis implements cell lysis by the stochiometric concentration of the biomass compounds of organisms to the concentration of substances in the environment

Usage

lysis(object, sublb, factor = object@minweight)

## S4 method for signature 'Organism'
lysis(object, sublb, factor = object@minweight)

Arguments

object	An object of class Organisms.
sublb	A vector containing the substance concentrations in the current position of the individual of interest.
factor	A number given the factor with which the biomass compound concentrations are multiplied to achieve the final concentration which is added to the environment

Details

Lysis is implemented by taking the intersect between biomass compounds and the substances in the environment and adding the normalized stochiometric concentrations of the biomass compounds to the medium.

Value

Returns the updated vector containing the substance concentrations in the current position of the dead individual of interest.

See Also

Organism-class and optimizeLP

Examples

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BacArena documentation built on July 2, 2020, 3:16 a.m.