plotShadowCost: Function to plot substance shadow costs for a specie

In BacArena: Modeling Framework for Cellular Communities in their Environments

Description

The generic function plotShadowCost plots substances have the highest impact on further growth (shadow cost < 0)

Usage

plotShadowCost(
  object,
  spec_nr = 1,
  sub_nr = 10,
  cutoff = -1,
  noplot = FALSE,
  useNames = FALSE
)

## S4 method for signature 'Eval'
plotShadowCost(
  object,
  spec_nr = 1,
  sub_nr = 10,
  cutoff = -1,
  noplot = FALSE,
  useNames = FALSE
)

Arguments

object	An object of class Eval.
spec_nr	Number of the specie
sub_nr	Maximal number of substances to be show
cutoff	Shadow costs should be smaller than cutoff
noplot	Do not plot
useNames	Use substance names instead of ids

Details

Returns ggplot objects

BacArena documentation built on July 2, 2020, 3:16 a.m.