plotTotFlux: Function for plotting the overall change in reaction activity

In BacArena: Modeling Framework for Cellular Communities in their Environments

Description

The generic function plotTotFlux plots the time course of reactions with high variation in activity for an Eval object.

Usage

plotTotFlux(object, legendpos = "topright", num = 20)

## S4 method for signature 'Eval'
plotTotFlux(object, legendpos = "topright", num = 20)

Arguments

object	An object of class Eval.
legendpos	A character variable declaring the position of the legend
num	An integer defining the number of substrates to be plot

Examples

data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
plotTotFlux(eval)

BacArena documentation built on July 2, 2020, 3:16 a.m.