plotTotFlux: Function for plotting the overall change in reaction activity

Description

The generic function plotTotFlux plots the time course of reactions with high variation in activity for an Eval object.

Usage

1
2
3
4
plotTotFlux(object, legendpos = "topright", num = 20)

## S4 method for signature 'Eval'
plotTotFlux(object, legendpos = "topright", num = 20)

Arguments

object

An object of class Eval.

legendpos

A character variable declaring the position of the legend

num

An integer defining the number of substrates to be plot

Examples

1
2
3
4
5
6
7
8
data(Ec_core, envir = environment()) #get Escherichia coli core metabolic model
bac <- Bac(Ec_core,deathrate=0.05,
           minweight=0.05,growtype="exponential") #initialize a bacterium
arena <- Arena(n=20,m=20) #initialize the environment
arena <- addOrg(arena,bac,amount=10) #add 10 organisms
arena <- addSubs(arena,40) #add all possible substances
eval <- simEnv(arena,5)
plotTotFlux(eval)

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.