write.map: Write a genetic map to a file

In BatchMap: Software for the Creation of High Density Linkage Maps in Outcrossing Species

Description

Write a genetic map to a file, base on a given map, or a list of maps. The output file can be used as an input to perform QTL mapping using the package R/qtl. It is also possible to create an output to be used with QTLCartographer program.

Usage

write.map(map.list, file.out)

Arguments

map.list	a map, i.e. an object of class sequence with a predefined order, linkage phases, recombination fraction and likelihood or a list of maps.
file.out	output map file.

Details

This function is avaliable only for backcross, F2 and RILs.

Author(s)

Marcelo Mollinari, [e-mail]

References

Broman, K. W., Wu, H., Churchill, G., Sen, S., Yandell, B. (2008) qtl: Tools for analyzing QTL experiments R package version 1.09-43

Wang S., Basten, C. J. and Zeng Z.-B. (2010) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC.

BatchMap documentation built on May 2, 2019, 3:45 p.m.