Files in BatchMap
Software for the Creation of High Density Linkage Maps in Outcrossing Species
MD5
NEWS
DESCRIPTION
README.md
NAMESPACE
inst/doc/BatchMap.Rmd
inst/doc/BatchMap.R
inst/doc/BatchMap.html
inst/example/sim7.5k.txt.gz
inst/example/cached.results.RData
inst/example/example.out.txt
vignettes/BatchMap.Rmd
vignettes/BatchMap.md
R/comb.ger.R
R/try.seq.R
R/add.marker.R
R/zzz.R
R/ripple.seq.R
R/suggest.lod.R
R/write.map.R
R/rf.2pts.R
R/draw.map.R
R/make.seq.R
R/pseudo.testcross.split.R
R/phases.R
R/overlapping.batches.R
R/record.R
R/read.outcross.R
R/test.segregation.R
R/ug.R
R/adjust.rils.R
R/drop.marker.R
R/RcppExports.R
R/marker.type.R
R/read.outcross2.R
R/acum.R
R/permutations.R
R/rcd.R
R/map.func.R
R/avoid.reverse.R
R/seriation.R
R/ripple.ord.R
R/read.mapmaker.R
R/record.parallel.rfc.R
R/group.R
R/compare.R
R/codif.data.R
R/cpp.utils.R
R/read.onemap.R
R/combine.onemap.R
R/create.dataset.bins.R
R/seeded.map.R
R/plot.raw.data.R
R/map.R
R/get.info.2pt.R
R/order.seq.R
R/return.geno.R
R/find.bins.R
src/progressBar.h
src/READ_OUTCROSS.cpp
src/Makevars.win
src/hmm_out.cpp
src/utils.cpp
src/RcppExports.cpp
src/twopts_out.h
src/hmm_out.h
src/utils.h
src/find_bins.h
src/out_est.cpp
src/record.cpp
src/Makevars
src/find_bins.cpp
src/GET_RF.cpp
src/twopts_out.cpp
src/out_est.h
man/read.outcross.Rd
man/plot.by.segreg.type.Rd
man/group.Rd
man/drop.marker.Rd
man/pseudo.testcross.split.Rd
man/try.seq.Rd
man/plot.onemap.Rd
man/ug.Rd
man/print.outcross.Rd
man/rf.2pts.Rd
man/order.seq.Rd
man/compare.Rd
man/print.try.Rd
man/read.outcross2.Rd
man/map.overlapping.batches.Rd
man/suggest.lod.Rd
man/plot.onemap.segreg.test.Rd
man/find.bins.Rd
man/print.group.Rd
man/read.onemap.Rd
man/seeded.map.Rd
man/read.mapmaker.Rd
man/marker.type.Rd
man/onemap-internal.Rd
man/set.map.fun.Rd
man/ripple.seq.Rd
man/create.dataframe.for.plot.outcross.Rd
man/write.map.Rd
man/seriation.Rd
man/rcd.Rd
man/est_map_hmm_out.Rd
man/make.seq.Rd
man/record.parallel.Rd
man/record.Rd
man/ripple.ord.Rd
man/map.Rd
man/select.segreg.Rd
man/add.marker.Rd
man/draw.map.Rd
man/print.rf.2pts.Rd
man/test.segregation.of.a.marker.Rd
man/Bonferroni.alpha.Rd
man/pick.batch.sizes.Rd
man/print.onemap.segreg.test.Rd
man/map_func.Rd
man/test.segregation.Rd
man/create.data.bins.Rd
man/combine.onemap.Rd
man/example.out.Rd
man/ripple.window.Rd
build/vignette.rds
data/example.out.RData
