draw.map: Draw a genetic map

In BatchMap: Software for the Creation of High Density Linkage Maps in Outcrossing Species

Description

Provides a simple draw of a genetic map.

Usage

draw.map(map.list, horizontal = FALSE, names = FALSE, grid = FALSE,
  cex.mrk = 1, cex.grp = 0.75)

Arguments

map.list	a map, i.e. an object of class sequence with a predefined order, linkage phases, recombination fraction and likelihood; also it could be a list of maps.
horizontal	if TRUE, indicates that the map should be plotted horizontally. Default is FALSE
names	if TRUE, displays the names of the markers. Default is FALSE
grid	if TRUE, displays a grid in the background. Default is FALSE
cex.mrk	the magnification to be used for markers.
cex.grp	the magnification to be used for group axis annotation.

Author(s)

Marcelo Mollinari, [e-mail]

Examples

## Not run: 
 #outcross example
  data(example.out)
  twopt <- rf.2pts(example.out)
  lg<-group(make.seq(twopt, "all"))
  maps<-vector("list", lg$n.groups)
  for(i in 1:lg$n.groups)
     maps[[i]]<- make.seq(order.seq(input.seq= make.seq(lg,i),twopt.alg =
   "rcd"), "force")
  draw.map(maps, grid=TRUE)
  draw.map(maps, grid=TRUE, horizontal=TRUE)


## End(Not run)

BatchMap documentation built on May 2, 2019, 3:45 p.m.