API for BatchMap
Software for the Creation of High Density Linkage Maps in Outcrossing Species

Global functions
Bonferroni.alpha Man page Source code
CCOUNT Man page Source code
Cindex Man page Source code
GET_RF_MAT_NO_LOD Man page Source code
READ_OUTCROSS Man page Source code
_BatchMap_CCOUNT Man page
_BatchMap_GET_RF_MAT_NO_LOD Man page
_BatchMap_READ_OUTCROSS Man page
acum Man page Source code
add.marker Man page Source code
adjust.rf.ril Man page Source code
avoid.reverse Man page Source code
check.linkage Man page Source code
codif.data Man page Source code
comb Man page Source code
comb.ger Man page Source code
combine.onemap Man page Source code
compare Man page Source code
compare.outcross Man page Source code
create.data.bins Man page Source code
create.dataframe.for.plot.outcross Man page Source code
diplo Man page Source code
draw.map Man page Source code
drop.marker Man page Source code
est_hmm_out Man page
est_map_hmm_out Man page Source code
est_rf_out Man page Source code
est_rf_out_wrap Man page
example.out Man page
find.bins Man page Source code
flip_phases Man page
generate.overlapping.batches Man page Source code
generate_all Man page Source code
generate_one Man page Source code
generate_rand Man page Source code
get.bins Man page Source code
get_bins Man page
get_mat_rf_in Man page
get_mat_rf_out Man page Source code
get_twopt_info Man page Source code
get_vec_rf_in Man page
get_vec_rf_out Man page Source code
group Man page Source code
haldane Man page Source code
kosambi Man page Source code
make.seq Man page Source code
map Man page Source code
map.overlapping.batches Man page Source code
map_func Man page
marker.type Man page Source code
order.seq Man page Source code
perm.pars Man page Source code
perm.tot Man page Source code
phases Man page Source code
pick.batch.sizes Man page Source code
plot.by.segreg.type Man page Source code
plot.onemap Man page Source code
plot.onemap.segreg.test Man page Source code
predict_time Man page Source code
print.compare Man page Source code
print.group Man page Source code
print.onemap Man page Source code
print.onemap.bin Man page Source code
print.onemap.segreg.test Man page Source code
print.order Man page Source code
print.outcross Man page Source code
print.rf.2pts Man page Source code
print.sequence Man page Source code
print.try Man page Source code
pseudo.testcross.split Man page Source code
rcd Man page Source code
read.mapmaker Man page Source code
read.onemap Man page Source code
read.outcross Man page Source code
read.outcross2 Man page Source code
record Man page Source code
record.parallel Man page Source code
rem.amb.ph Man page Source code
return.geno Man page Source code
rf.2pts Man page Source code
ripple.ord Man page Source code
ripple.seq Man page Source code
ripple.window Man page Source code
seeded.map Man page Source code
select.segreg Man page Source code
ser.ord Man page Source code
seriation Man page Source code
set.map.fun Man page Source code
split_map_batches Man page
suggest.lod Man page Source code
test.segregation Man page Source code
test.segregation.of.a.marker Man page Source code
try.seq Man page Source code
try.seq.outcross Man page Source code
ug Man page Source code
write.map Man page Source code
BatchMap documentation built on Nov. 17, 2017, 8:12 a.m.