BayesFactor: Computation of Bayes Factors for Common Designs
Version 0.9.12-2

A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.

AuthorRichard D. Morey [aut, cre], Jeffrey N. Rouder [aut], Tahira Jamil [ctb]
Date of publication2015-09-19 19:50:23
MaintainerRichard D. Morey <richarddmorey@gmail.com>
LicenseGPL-2
Version0.9.12-2
URL http://bayesfactorpcl.r-forge.r-project.org/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BayesFactor")

Getting started

Package overview

Popular man pages

BayesFactor-package: Functions to compute Bayes factor hypothesis tests for common...
generalTestBF: Function to compute Bayes factors for general designs
plot.BFBayesFactor: Plot a Bayes factor object
proportionBF: Function for Bayesian analysis of proportions
raceDolls: Hraba and Grant (1970) children's doll preference data
regressionBF: Function to compute Bayes factors for regression designs
ttest.tstat: Use t statistic to compute Bayes factor for one- and two-...
See all...

All man pages Function index File listing

Man pages

anovaBF: Function to compute Bayes factors for ANOVA designs
as.BFBayesFactor: Function to coerce objects to the BFBayesFactor class
as.BFprobability: Function to coerce objects to the BFprobability class
BayesFactor-package: Functions to compute Bayes factor hypothesis tests for common...
BFBayesFactor-class: General S4 class for representing multiple Bayes factor model...
BFBayesFactorList-class: General S4 class for representing a collection of Bayes...
BFInfo: Prints the version information for the BayesFactor package
BFManual: Opens the HTML manual for the BayesFactor package
BFodds-class: General S4 class for representing multiple odds model...
BFprobability-class: General S4 class for representing multiple model probability...
compare-methods: Compare two models, with respect to some data
contingencyTableBF: Function for Bayesian analysis of one- and two-sample designs
enumerateGeneralModels: Function for generation of nested linear models
extractBF-methods: Extract the Bayes factor from an object
extractOdds-methods: Extract the odds from an object
extractProbabilities-methods: Extract the probabilities from an object
filterBF: Filter the elements of an object according to some...
generalTestBF: Function to compute Bayes factors for general designs
grapes-same-grapes: Compare two objects to see if they are the 'same', for some...
grapes-termin-grapes: Find a model term in a vector of model terms
linearReg.R2stat: Use R^2 statistic to compute Bayes factor for regression...
lmBF: Function to compute Bayes factors for specific linear models
logMeanExpLogs: Functions to compute the logarithm of the mean (and...
meta.ttestBF: Function for Bayesian analysis of one- and two-sample designs
model-classes: General S4 classes for representing models for comparison
model.matrix-methods: Design matrices for Bayes factor linear models analyses.
newPriorOdds: Create prior odds from a Bayes factor object
nWayAOV: Use ANOVA design matrix to compute Bayes factors or sample...
oneWayAOV.Fstat: Use F statistic to compute Bayes factor for balanced one-way...
options-BayesFactor: options() for package BayesFactor
plot.BFBayesFactor: Plot a Bayes factor object
plot.BFBayesFactorTop: Plot a Bayes factor top-down object
posterior-methods: Sample from the posterior distribution of one of several...
priorLogodds-method: Set prior log odds in an object
priorOdds-method: Set prior odds in an object
proportionBF: Function for Bayesian analysis of proportions
puzzles: Puzzle completion times from Hays (1994)
raceDolls: Hraba and Grant (1970) children's doll preference data
recompute-methods: Recompute a Bayes factor computation or MCMC object.
regressionBF: Function to compute Bayes factors for regression designs
ttestBF: Function for Bayesian analysis of one- and two-sample designs
ttest.tstat: Use t statistic to compute Bayes factor for one- and two-...

Functions

Files

inst
inst/tests
inst/tests/test-anovaBF.R
inst/doc
inst/doc/odds_probs.html
inst/doc/index.html
inst/doc/compare_lme4.R
inst/doc/priors.Rmd
inst/doc/priors.R
inst/doc/compare_lme4.html
inst/doc/index.Rmd
inst/doc/priors.html
inst/doc/compare_lme4.Rmd
inst/doc/manual.Rmd
inst/doc/manual.R
inst/doc/index.R
inst/doc/manual.html
inst/doc/odds_probs.Rmd
inst/doc/odds_probs.R
tests
tests/run-all.R
src
src/linearRegGibbsRcpp.cpp
src/bfcommon.h
src/logSummaryStats.cpp
src/logRepresentedReal.cpp
src/logUtility.cpp
src/interrupts.h
src/progress.h
src/progress.cpp
src/interruptable_progress_monitor.h
src/jzs_marg_like.cpp
src/logRepresentedReal.h
src/dinvgamma.cpp
src/rmvnorm.cpp
src/ttestRcpp.cpp
src/jzs_bf_samplers.cpp
src/RcppCallback.cpp
src/interrupts.cpp
src/metattest.cpp
src/ttestIndepRcpp.cpp
src/jzs_Gauss_approx_aov.cpp
src/RcppExports.cpp
src/proportion.cpp
src/logDeterminant.cpp
src/jzs_Gibbs.cpp
NAMESPACE
NEWS
data
data/puzzles.rda
data/raceDolls.rda
R
R/meta.ttestBF.R
R/ttestBF.R
R/logMean.R
R/nWayAOV.R
R/methods-BFBayesFactor.R
R/anovaBF.R
R/version.R
R/model.matrix.R
R/ttest_tstat.R
R/methods-BFBayesFactorList.R
R/oneWayAOV_Fstat.R
R/checking.R
R/nWayAOV-utility.R
R/methods-BFBayesFactorTop.R
R/onAttach.R
R/oneWayAOV-utility.R
R/proportionBF.R
R/proportion-utility.R
R/checkCallback.R
R/ttest-utility.R
R/contingency.R
R/aaClasses.R
R/methods-BFodds.R
R/plot-BFBayesFactor.R
R/aaGenerics.R
R/lmBF.R
R/meta-ttest-utility.R
R/common.R
R/manual.R
R/RcppExports.R
R/newPriorOdds.R
R/contingency-utility.R
R/methods-BFmodelSample.R
R/regressionBF-utility.R
R/linearReg_R2stat.R
R/gaussApproxAOV.R
R/generalTest-utility.R
R/methods-BFprobability.R
R/BayesFactorPCL-package.R
R/plot-BFBayesFactorTop.R
R/methods-BFmodel.R
R/methods-BFlinearModel-compare.R
R/regressionBF.R
R/anovaBF-utility.R
R/generalTestBF.R
vignettes
vignettes/priors.Rmd
vignettes/extra
vignettes/extra/logo.png
vignettes/extra/github.png
vignettes/extra/socialmedia
vignettes/extra/socialmedia/png
vignettes/extra/socialmedia/png/48x48
vignettes/extra/socialmedia/png/48x48/myspace.png
vignettes/extra/socialmedia/png/48x48/deviantart.png
vignettes/extra/socialmedia/png/48x48/linkedin.png
vignettes/extra/socialmedia/png/48x48/youtube.png
vignettes/extra/socialmedia/png/48x48/email.png
vignettes/extra/socialmedia/png/48x48/app_store.png
vignettes/extra/socialmedia/png/48x48/facebook.png
vignettes/extra/socialmedia/png/48x48/friendster.png
vignettes/extra/socialmedia/png/48x48/odnoklassniki.png
vignettes/extra/socialmedia/png/48x48/digg.png
vignettes/extra/socialmedia/png/48x48/pinterest.png
vignettes/extra/socialmedia/png/48x48/sharethis.png
vignettes/extra/socialmedia/png/48x48/google_play.png
vignettes/extra/socialmedia/png/48x48/bebo.png
vignettes/extra/socialmedia/png/48x48/vimeo.png
vignettes/extra/socialmedia/png/48x48/wordpress.png
vignettes/extra/socialmedia/png/48x48/reddit.png
vignettes/extra/socialmedia/png/48x48/skype.png
vignettes/extra/socialmedia/png/48x48/delicious.png
vignettes/extra/socialmedia/png/48x48/stumbleupon.png
vignettes/extra/socialmedia/png/48x48/apple.png
vignettes/extra/socialmedia/png/48x48/evernote.png
vignettes/extra/socialmedia/png/48x48/blogger.png
vignettes/extra/socialmedia/png/48x48/rss.png
vignettes/extra/socialmedia/png/48x48/addthis.png
vignettes/extra/socialmedia/png/48x48/hi5.png
vignettes/extra/socialmedia/png/48x48/vkontakte.png
vignettes/extra/socialmedia/png/48x48/orkut.png
vignettes/extra/socialmedia/png/48x48/twitter.png
vignettes/extra/socialmedia/png/48x48/livejournal.png
vignettes/extra/socialmedia/png/48x48/dribbble.png
vignettes/extra/socialmedia/png/48x48/android.png
vignettes/extra/socialmedia/png/48x48/google_plus.png
vignettes/extra/socialmedia/png/32x32
vignettes/extra/socialmedia/png/32x32/myspace.png
vignettes/extra/socialmedia/png/32x32/deviantart.png
vignettes/extra/socialmedia/png/32x32/linkedin.png
vignettes/extra/socialmedia/png/32x32/youtube.png
vignettes/extra/socialmedia/png/32x32/email.png
vignettes/extra/socialmedia/png/32x32/app_store.png
vignettes/extra/socialmedia/png/32x32/facebook.png
vignettes/extra/socialmedia/png/32x32/friendster.png
vignettes/extra/socialmedia/png/32x32/odnoklassniki.png
vignettes/extra/socialmedia/png/32x32/digg.png
vignettes/extra/socialmedia/png/32x32/pinterest.png
vignettes/extra/socialmedia/png/32x32/sharethis.png
vignettes/extra/socialmedia/png/32x32/google_play.png
vignettes/extra/socialmedia/png/32x32/bebo.png
vignettes/extra/socialmedia/png/32x32/vimeo.png
vignettes/extra/socialmedia/png/32x32/wordpress.png
vignettes/extra/socialmedia/png/32x32/reddit.png
vignettes/extra/socialmedia/png/32x32/skype.png
vignettes/extra/socialmedia/png/32x32/delicious.png
vignettes/extra/socialmedia/png/32x32/stumbleupon.png
vignettes/extra/socialmedia/png/32x32/apple.png
vignettes/extra/socialmedia/png/32x32/evernote.png
vignettes/extra/socialmedia/png/32x32/blogger.png
vignettes/extra/socialmedia/png/32x32/rss.png
vignettes/extra/socialmedia/png/32x32/addthis.png
vignettes/extra/socialmedia/png/32x32/hi5.png
vignettes/extra/socialmedia/png/32x32/vkontakte.png
vignettes/extra/socialmedia/png/32x32/orkut.png
vignettes/extra/socialmedia/png/32x32/twitter.png
vignettes/extra/socialmedia/png/32x32/livejournal.png
vignettes/extra/socialmedia/png/32x32/dribbble.png
vignettes/extra/socialmedia/png/32x32/android.png
vignettes/extra/socialmedia/png/32x32/google_plus.png
vignettes/extra/socialmedia/readme.txt
vignettes/extra/manual.css
vignettes/index.Rmd
vignettes/compare_lme4.Rmd
vignettes/manual.Rmd
vignettes/odds_probs.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/extractProbabilities-methods.Rd
man/model.matrix-methods.Rd
man/options-BayesFactor.Rd
man/enumerateGeneralModels.Rd
man/compare-methods.Rd
man/priorLogodds-method.Rd
man/BFBayesFactorList-class.Rd
man/anovaBF.Rd
man/BFBayesFactor-class.Rd
man/meta.ttestBF.Rd
man/extractBF-methods.Rd
man/filterBF.Rd
man/linearReg.R2stat.Rd
man/posterior-methods.Rd
man/raceDolls.Rd
man/BFInfo.Rd
man/priorOdds-method.Rd
man/grapes-termin-grapes.Rd
man/newPriorOdds.Rd
man/regressionBF.Rd
man/BayesFactor-package.Rd
man/lmBF.Rd
man/ttestBF.Rd
man/plot.BFBayesFactor.Rd
man/nWayAOV.Rd
man/contingencyTableBF.Rd
man/grapes-same-grapes.Rd
man/generalTestBF.Rd
man/ttest.tstat.Rd
man/BFManual.Rd
man/recompute-methods.Rd
man/extractOdds-methods.Rd
man/puzzles.Rd
man/proportionBF.Rd
man/as.BFBayesFactor.Rd
man/model-classes.Rd
man/BFprobability-class.Rd
man/as.BFprobability.Rd
man/plot.BFBayesFactorTop.Rd
man/logMeanExpLogs.Rd
man/oneWayAOV.Fstat.Rd
man/BFodds-class.Rd
.Rinstignore
BayesFactor documentation built on May 19, 2017, 1:39 p.m.

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