BayesFactor: Computation of Bayes Factors for Common Designs

A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.

Author
Richard D. Morey [aut, cre], Jeffrey N. Rouder [aut], Tahira Jamil [ctb]
Date of publication
2015-09-19 19:50:23
Maintainer
Richard D. Morey <richarddmorey@gmail.com>
License
GPL-2
Version
0.9.12-2
URLs

View on CRAN

Man pages

anovaBF
Function to compute Bayes factors for ANOVA designs
as.BFBayesFactor
Function to coerce objects to the BFBayesFactor class
as.BFprobability
Function to coerce objects to the BFprobability class
BayesFactor-package
Functions to compute Bayes factor hypothesis tests for common...
BFBayesFactor-class
General S4 class for representing multiple Bayes factor model...
BFBayesFactorList-class
General S4 class for representing a collection of Bayes...
BFInfo
Prints the version information for the BayesFactor package
BFManual
Opens the HTML manual for the BayesFactor package
BFodds-class
General S4 class for representing multiple odds model...
BFprobability-class
General S4 class for representing multiple model probability...
compare-methods
Compare two models, with respect to some data
contingencyTableBF
Function for Bayesian analysis of one- and two-sample designs
enumerateGeneralModels
Function for generation of nested linear models
extractBF-methods
Extract the Bayes factor from an object
extractOdds-methods
Extract the odds from an object
extractProbabilities-methods
Extract the probabilities from an object
filterBF
Filter the elements of an object according to some...
generalTestBF
Function to compute Bayes factors for general designs
grapes-same-grapes
Compare two objects to see if they are the 'same', for some...
grapes-termin-grapes
Find a model term in a vector of model terms
linearReg.R2stat
Use R^2 statistic to compute Bayes factor for regression...
lmBF
Function to compute Bayes factors for specific linear models
logMeanExpLogs
Functions to compute the logarithm of the mean (and...
meta.ttestBF
Function for Bayesian analysis of one- and two-sample designs
model-classes
General S4 classes for representing models for comparison
model.matrix-methods
Design matrices for Bayes factor linear models analyses.
newPriorOdds
Create prior odds from a Bayes factor object
nWayAOV
Use ANOVA design matrix to compute Bayes factors or sample...
oneWayAOV.Fstat
Use F statistic to compute Bayes factor for balanced one-way...
options-BayesFactor
options() for package BayesFactor
plot.BFBayesFactor
Plot a Bayes factor object
plot.BFBayesFactorTop
Plot a Bayes factor top-down object
posterior-methods
Sample from the posterior distribution of one of several...
priorLogodds-method
Set prior log odds in an object
priorOdds-method
Set prior odds in an object
proportionBF
Function for Bayesian analysis of proportions
puzzles
Puzzle completion times from Hays (1994)
raceDolls
Hraba and Grant (1970) children's doll preference data
recompute-methods
Recompute a Bayes factor computation or MCMC object.
regressionBF
Function to compute Bayes factors for regression designs
ttestBF
Function for Bayesian analysis of one- and two-sample designs
ttest.tstat
Use t statistic to compute Bayes factor for one- and two-...

Files in this package

BayesFactor
BayesFactor/inst
BayesFactor/inst/tests
BayesFactor/inst/tests/test-anovaBF.R
BayesFactor/inst/doc
BayesFactor/inst/doc/odds_probs.html
BayesFactor/inst/doc/index.html
BayesFactor/inst/doc/compare_lme4.R
BayesFactor/inst/doc/priors.Rmd
BayesFactor/inst/doc/priors.R
BayesFactor/inst/doc/compare_lme4.html
BayesFactor/inst/doc/index.Rmd
BayesFactor/inst/doc/priors.html
BayesFactor/inst/doc/compare_lme4.Rmd
BayesFactor/inst/doc/manual.Rmd
BayesFactor/inst/doc/manual.R
BayesFactor/inst/doc/index.R
BayesFactor/inst/doc/manual.html
BayesFactor/inst/doc/odds_probs.Rmd
BayesFactor/inst/doc/odds_probs.R
BayesFactor/tests
BayesFactor/tests/run-all.R
BayesFactor/src
BayesFactor/src/linearRegGibbsRcpp.cpp
BayesFactor/src/bfcommon.h
BayesFactor/src/logSummaryStats.cpp
BayesFactor/src/logRepresentedReal.cpp
BayesFactor/src/logUtility.cpp
BayesFactor/src/interrupts.h
BayesFactor/src/progress.h
BayesFactor/src/progress.cpp
BayesFactor/src/interruptable_progress_monitor.h
BayesFactor/src/jzs_marg_like.cpp
BayesFactor/src/logRepresentedReal.h
BayesFactor/src/dinvgamma.cpp
BayesFactor/src/rmvnorm.cpp
BayesFactor/src/ttestRcpp.cpp
BayesFactor/src/jzs_bf_samplers.cpp
BayesFactor/src/RcppCallback.cpp
BayesFactor/src/interrupts.cpp
BayesFactor/src/metattest.cpp
BayesFactor/src/ttestIndepRcpp.cpp
BayesFactor/src/jzs_Gauss_approx_aov.cpp
BayesFactor/src/RcppExports.cpp
BayesFactor/src/proportion.cpp
BayesFactor/src/logDeterminant.cpp
BayesFactor/src/jzs_Gibbs.cpp
BayesFactor/NAMESPACE
BayesFactor/NEWS
BayesFactor/data
BayesFactor/data/puzzles.rda
BayesFactor/data/raceDolls.rda
BayesFactor/R
BayesFactor/R/meta.ttestBF.R
BayesFactor/R/ttestBF.R
BayesFactor/R/logMean.R
BayesFactor/R/nWayAOV.R
BayesFactor/R/methods-BFBayesFactor.R
BayesFactor/R/anovaBF.R
BayesFactor/R/version.R
BayesFactor/R/model.matrix.R
BayesFactor/R/ttest_tstat.R
BayesFactor/R/methods-BFBayesFactorList.R
BayesFactor/R/oneWayAOV_Fstat.R
BayesFactor/R/checking.R
BayesFactor/R/nWayAOV-utility.R
BayesFactor/R/methods-BFBayesFactorTop.R
BayesFactor/R/onAttach.R
BayesFactor/R/oneWayAOV-utility.R
BayesFactor/R/proportionBF.R
BayesFactor/R/proportion-utility.R
BayesFactor/R/checkCallback.R
BayesFactor/R/ttest-utility.R
BayesFactor/R/contingency.R
BayesFactor/R/aaClasses.R
BayesFactor/R/methods-BFodds.R
BayesFactor/R/plot-BFBayesFactor.R
BayesFactor/R/aaGenerics.R
BayesFactor/R/lmBF.R
BayesFactor/R/meta-ttest-utility.R
BayesFactor/R/common.R
BayesFactor/R/manual.R
BayesFactor/R/RcppExports.R
BayesFactor/R/newPriorOdds.R
BayesFactor/R/contingency-utility.R
BayesFactor/R/methods-BFmodelSample.R
BayesFactor/R/regressionBF-utility.R
BayesFactor/R/linearReg_R2stat.R
BayesFactor/R/gaussApproxAOV.R
BayesFactor/R/generalTest-utility.R
BayesFactor/R/methods-BFprobability.R
BayesFactor/R/BayesFactorPCL-package.R
BayesFactor/R/plot-BFBayesFactorTop.R
BayesFactor/R/methods-BFmodel.R
BayesFactor/R/methods-BFlinearModel-compare.R
BayesFactor/R/regressionBF.R
BayesFactor/R/anovaBF-utility.R
BayesFactor/R/generalTestBF.R
BayesFactor/vignettes
BayesFactor/vignettes/priors.Rmd
BayesFactor/vignettes/extra
BayesFactor/vignettes/extra/logo.png
BayesFactor/vignettes/extra/github.png
BayesFactor/vignettes/extra/socialmedia
BayesFactor/vignettes/extra/socialmedia/png
BayesFactor/vignettes/extra/socialmedia/png/48x48
BayesFactor/vignettes/extra/socialmedia/png/48x48/myspace.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/deviantart.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/linkedin.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/youtube.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/email.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/app_store.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/facebook.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/friendster.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/odnoklassniki.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/digg.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/pinterest.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/sharethis.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/google_play.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/bebo.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/vimeo.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/wordpress.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/reddit.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/skype.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/delicious.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/stumbleupon.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/apple.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/evernote.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/blogger.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/rss.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/addthis.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/hi5.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/vkontakte.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/orkut.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/twitter.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/livejournal.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/dribbble.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/android.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/google_plus.png
BayesFactor/vignettes/extra/socialmedia/png/32x32
BayesFactor/vignettes/extra/socialmedia/png/32x32/myspace.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/deviantart.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/linkedin.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/youtube.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/email.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/app_store.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/facebook.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/friendster.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/odnoklassniki.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/digg.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/pinterest.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/sharethis.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/google_play.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/bebo.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/vimeo.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/wordpress.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/reddit.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/skype.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/delicious.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/stumbleupon.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/apple.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/evernote.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/blogger.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/rss.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/addthis.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/hi5.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/vkontakte.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/orkut.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/twitter.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/livejournal.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/dribbble.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/android.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/google_plus.png
BayesFactor/vignettes/extra/socialmedia/readme.txt
BayesFactor/vignettes/extra/manual.css
BayesFactor/vignettes/index.Rmd
BayesFactor/vignettes/compare_lme4.Rmd
BayesFactor/vignettes/manual.Rmd
BayesFactor/vignettes/odds_probs.Rmd
BayesFactor/MD5
BayesFactor/build
BayesFactor/build/vignette.rds
BayesFactor/DESCRIPTION
BayesFactor/man
BayesFactor/man/extractProbabilities-methods.Rd
BayesFactor/man/model.matrix-methods.Rd
BayesFactor/man/options-BayesFactor.Rd
BayesFactor/man/enumerateGeneralModels.Rd
BayesFactor/man/compare-methods.Rd
BayesFactor/man/priorLogodds-method.Rd
BayesFactor/man/BFBayesFactorList-class.Rd
BayesFactor/man/anovaBF.Rd
BayesFactor/man/BFBayesFactor-class.Rd
BayesFactor/man/meta.ttestBF.Rd
BayesFactor/man/extractBF-methods.Rd
BayesFactor/man/filterBF.Rd
BayesFactor/man/linearReg.R2stat.Rd
BayesFactor/man/posterior-methods.Rd
BayesFactor/man/raceDolls.Rd
BayesFactor/man/BFInfo.Rd
BayesFactor/man/priorOdds-method.Rd
BayesFactor/man/grapes-termin-grapes.Rd
BayesFactor/man/newPriorOdds.Rd
BayesFactor/man/regressionBF.Rd
BayesFactor/man/BayesFactor-package.Rd
BayesFactor/man/lmBF.Rd
BayesFactor/man/ttestBF.Rd
BayesFactor/man/plot.BFBayesFactor.Rd
BayesFactor/man/nWayAOV.Rd
BayesFactor/man/contingencyTableBF.Rd
BayesFactor/man/grapes-same-grapes.Rd
BayesFactor/man/generalTestBF.Rd
BayesFactor/man/ttest.tstat.Rd
BayesFactor/man/BFManual.Rd
BayesFactor/man/recompute-methods.Rd
BayesFactor/man/extractOdds-methods.Rd
BayesFactor/man/puzzles.Rd
BayesFactor/man/proportionBF.Rd
BayesFactor/man/as.BFBayesFactor.Rd
BayesFactor/man/model-classes.Rd
BayesFactor/man/BFprobability-class.Rd
BayesFactor/man/as.BFprobability.Rd
BayesFactor/man/plot.BFBayesFactorTop.Rd
BayesFactor/man/logMeanExpLogs.Rd
BayesFactor/man/oneWayAOV.Fstat.Rd
BayesFactor/man/BFodds-class.Rd
BayesFactor/.Rinstignore