BayesFactor: Computation of Bayes Factors for Common Designs

A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.

AuthorRichard D. Morey [aut, cre], Jeffrey N. Rouder [aut], Tahira Jamil [ctb]
Date of publication2015-09-19 19:50:23
MaintainerRichard D. Morey <richarddmorey@gmail.com>
LicenseGPL-2
Version0.9.12-2
http://bayesfactorpcl.r-forge.r-project.org/

View on CRAN

Man pages

anovaBF: Function to compute Bayes factors for ANOVA designs

as.BFBayesFactor: Function to coerce objects to the BFBayesFactor class

as.BFprobability: Function to coerce objects to the BFprobability class

BayesFactor-package: Functions to compute Bayes factor hypothesis tests for common...

BFBayesFactor-class: General S4 class for representing multiple Bayes factor model...

BFBayesFactorList-class: General S4 class for representing a collection of Bayes...

BFInfo: Prints the version information for the BayesFactor package

BFManual: Opens the HTML manual for the BayesFactor package

BFodds-class: General S4 class for representing multiple odds model...

BFprobability-class: General S4 class for representing multiple model probability...

compare-methods: Compare two models, with respect to some data

contingencyTableBF: Function for Bayesian analysis of one- and two-sample designs

enumerateGeneralModels: Function for generation of nested linear models

extractBF-methods: Extract the Bayes factor from an object

extractOdds-methods: Extract the odds from an object

extractProbabilities-methods: Extract the probabilities from an object

filterBF: Filter the elements of an object according to some...

generalTestBF: Function to compute Bayes factors for general designs

grapes-same-grapes: Compare two objects to see if they are the 'same', for some...

grapes-termin-grapes: Find a model term in a vector of model terms

linearReg.R2stat: Use R^2 statistic to compute Bayes factor for regression...

lmBF: Function to compute Bayes factors for specific linear models

logMeanExpLogs: Functions to compute the logarithm of the mean (and...

meta.ttestBF: Function for Bayesian analysis of one- and two-sample designs

model-classes: General S4 classes for representing models for comparison

model.matrix-methods: Design matrices for Bayes factor linear models analyses.

newPriorOdds: Create prior odds from a Bayes factor object

nWayAOV: Use ANOVA design matrix to compute Bayes factors or sample...

oneWayAOV.Fstat: Use F statistic to compute Bayes factor for balanced one-way...

options-BayesFactor: options() for package BayesFactor

plot.BFBayesFactor: Plot a Bayes factor object

plot.BFBayesFactorTop: Plot a Bayes factor top-down object

posterior-methods: Sample from the posterior distribution of one of several...

priorLogodds-method: Set prior log odds in an object

priorOdds-method: Set prior odds in an object

proportionBF: Function for Bayesian analysis of proportions

puzzles: Puzzle completion times from Hays (1994)

raceDolls: Hraba and Grant (1970) children's doll preference data

recompute-methods: Recompute a Bayes factor computation or MCMC object.

regressionBF: Function to compute Bayes factors for regression designs

ttestBF: Function for Bayesian analysis of one- and two-sample designs

ttest.tstat: Use t statistic to compute Bayes factor for one- and two-...

Functions

anovaBF Man page
as.BFBayesFactor Man page
as.BFprobability Man page
BayesFactor Man page
BayesFactor-package Man page
/,BFBayesFactor,BFBayesFactor-method Man page
*,BFBayesFactor,BFodds-method Man page
BFBayesFactor-class Man page
[,BFBayesFactor,index,missing,missing-method Man page
BFBayesFactorList-class Man page
[,BFBayesFactorList,index,index,missing-method Man page
[,BFBayesFactorList,index,missing,missing-method Man page
[,BFBayesFactorList,missing,index,missing-method Man page
BFBayesFactorTop-class Man page
[,BFBayesFactorTop,index,missing,missing-method Man page
BFcontingencyTable-class Man page
BFindepSample-class Man page
BFInfo Man page
BFlinearModel-class Man page
BFManual Man page
BFmodel-class Man page
*,BFodds,BFBayesFactor-method Man page
/,BFodds,BFodds-method Man page
BFodds-class Man page
[,BFodds,index,missing,missing-method Man page
BFoneSample-class Man page
BFprobability-class Man page
[,BFprobability,index,missing,missing-method Man page
-,BFprobability,numeric-method Man page
/,BFprobability,numeric-method Man page
compare Man page
compare,BFcontingencyTable,BFcontingencyTable,data.frame-method Man page
compare,BFcontingencyTable,missing,data.frame-method Man page
compare,BFindepSample,missing,data.frame-method Man page
compare,BFlinearModel,BFlinearModel,data.frame-method Man page
compare,BFlinearModel,missing,data.frame-method Man page
compare,BFmcmc,BFmcmc,ANY-method Man page
compare,BFmcmc,missing,ANY-method Man page
compare,BFmetat,missing,data.frame-method Man page
compare,BFoneSample,missing,data.frame-method Man page
compare,BFproportion,missing,data.frame-method Man page
contingencyTableBF Man page
enumerateGeneralModels Man page
extractBF Man page
extractBF,BFBayesFactor-method Man page
extractOdds Man page
extractOdds,BFodds-method Man page
extractProbabilities Man page
extractProbabilities,BFprobability-method Man page
filterBF Man page
filterBF,BFprobability,character-method Man page
generalTestBF Man page
is.na,BFBayesFactor-method Man page
linearReg.R2stat Man page
lmBF Man page
logCumMeanExpLogs Man page
logMeanExpLogs Man page
logSummaryStats Man page
meta.ttestBF Man page
model.matrix,BFBayesFactor Man page
model.matrix,BFBayesFactor-method Man page
model.matrix,BFBayesFactorTop-method Man page
newPriorOdds Man page
/,numeric,BFBayesFactorList-method Man page
/,numeric,BFBayesFactor-method Man page
/,numeric,BFodds-method Man page
nWayAOV Man page
oneWayAOV.Fstat Man page
options-BayesFactor Man page
plot.BFBayesFactor Man page
plot.BFBayesFactorTop Man page
posterior Man page
posterior,BFBayesFactor,missing,missing,missing-method Man page
posterior,BFBayesFactor,missing,missing,numeric-method Man page
posterior,BFBayesFactor,numeric,missing,numeric-method Man page
posterior,BFcontingencyTable,missing,data.frame,numeric-method Man page
posterior,BFindepSample,missing,data.frame,numeric-method Man page
posterior,BFlinearModel,missing,data.frame,numeric-method Man page
posterior,BFmetat,missing,data.frame,numeric-method Man page
posterior,BFmodel,missing,data.frame,missing-method Man page
posterior,BFoneSample,missing,data.frame,numeric-method Man page
posterior,BFproportion,missing,data.frame,numeric-method Man page
priorLogodds<- Man page
priorLogodds<-,BFodds,numeric-method Man page
priorOdds<- Man page
priorOdds<-,BFodds,numeric-method Man page
proportionBF Man page
puzzles Man page
raceDolls Man page
recompute Man page
recompute,BFBayesFactor-method Man page
recompute,BFBayesFactorTop-method Man page
recompute,BFmcmc-method Man page
recompute,BFodds-method Man page
regressionBF Man page
\%same\% Man page
t,BFBayesFactorList-method Man page
t,BFBayesFactor-method Man page
\%termin\% Man page
ttestBF Man page
ttest.tstat Man page
which.max,BFBayesFactor-method Man page
which.min,BFBayesFactor-method Man page

Files

BayesFactor
BayesFactor/inst
BayesFactor/inst/tests
BayesFactor/inst/tests/test-anovaBF.R
BayesFactor/inst/doc
BayesFactor/inst/doc/odds_probs.html
BayesFactor/inst/doc/index.html
BayesFactor/inst/doc/compare_lme4.R
BayesFactor/inst/doc/priors.Rmd
BayesFactor/inst/doc/priors.R
BayesFactor/inst/doc/compare_lme4.html
BayesFactor/inst/doc/index.Rmd
BayesFactor/inst/doc/priors.html
BayesFactor/inst/doc/compare_lme4.Rmd
BayesFactor/inst/doc/manual.Rmd
BayesFactor/inst/doc/manual.R
BayesFactor/inst/doc/index.R
BayesFactor/inst/doc/manual.html
BayesFactor/inst/doc/odds_probs.Rmd
BayesFactor/inst/doc/odds_probs.R
BayesFactor/tests
BayesFactor/tests/run-all.R
BayesFactor/src
BayesFactor/src/linearRegGibbsRcpp.cpp
BayesFactor/src/bfcommon.h
BayesFactor/src/logSummaryStats.cpp
BayesFactor/src/logRepresentedReal.cpp
BayesFactor/src/logUtility.cpp
BayesFactor/src/interrupts.h
BayesFactor/src/progress.h
BayesFactor/src/progress.cpp
BayesFactor/src/interruptable_progress_monitor.h
BayesFactor/src/jzs_marg_like.cpp
BayesFactor/src/logRepresentedReal.h
BayesFactor/src/dinvgamma.cpp
BayesFactor/src/rmvnorm.cpp
BayesFactor/src/ttestRcpp.cpp
BayesFactor/src/jzs_bf_samplers.cpp
BayesFactor/src/RcppCallback.cpp
BayesFactor/src/interrupts.cpp
BayesFactor/src/metattest.cpp
BayesFactor/src/ttestIndepRcpp.cpp
BayesFactor/src/jzs_Gauss_approx_aov.cpp
BayesFactor/src/RcppExports.cpp
BayesFactor/src/proportion.cpp
BayesFactor/src/logDeterminant.cpp
BayesFactor/src/jzs_Gibbs.cpp
BayesFactor/NAMESPACE
BayesFactor/NEWS
BayesFactor/data
BayesFactor/data/puzzles.rda
BayesFactor/data/raceDolls.rda
BayesFactor/R
BayesFactor/R/meta.ttestBF.R BayesFactor/R/ttestBF.R BayesFactor/R/logMean.R BayesFactor/R/nWayAOV.R BayesFactor/R/methods-BFBayesFactor.R BayesFactor/R/anovaBF.R BayesFactor/R/version.R BayesFactor/R/model.matrix.R BayesFactor/R/ttest_tstat.R BayesFactor/R/methods-BFBayesFactorList.R BayesFactor/R/oneWayAOV_Fstat.R BayesFactor/R/checking.R BayesFactor/R/nWayAOV-utility.R BayesFactor/R/methods-BFBayesFactorTop.R BayesFactor/R/onAttach.R BayesFactor/R/oneWayAOV-utility.R BayesFactor/R/proportionBF.R BayesFactor/R/proportion-utility.R BayesFactor/R/checkCallback.R BayesFactor/R/ttest-utility.R BayesFactor/R/contingency.R BayesFactor/R/aaClasses.R BayesFactor/R/methods-BFodds.R BayesFactor/R/plot-BFBayesFactor.R BayesFactor/R/aaGenerics.R BayesFactor/R/lmBF.R BayesFactor/R/meta-ttest-utility.R BayesFactor/R/common.R BayesFactor/R/manual.R BayesFactor/R/RcppExports.R BayesFactor/R/newPriorOdds.R BayesFactor/R/contingency-utility.R BayesFactor/R/methods-BFmodelSample.R BayesFactor/R/regressionBF-utility.R BayesFactor/R/linearReg_R2stat.R BayesFactor/R/gaussApproxAOV.R BayesFactor/R/generalTest-utility.R BayesFactor/R/methods-BFprobability.R BayesFactor/R/BayesFactorPCL-package.R BayesFactor/R/plot-BFBayesFactorTop.R BayesFactor/R/methods-BFmodel.R BayesFactor/R/methods-BFlinearModel-compare.R BayesFactor/R/regressionBF.R BayesFactor/R/anovaBF-utility.R BayesFactor/R/generalTestBF.R
BayesFactor/vignettes
BayesFactor/vignettes/priors.Rmd
BayesFactor/vignettes/extra
BayesFactor/vignettes/extra/logo.png
BayesFactor/vignettes/extra/github.png
BayesFactor/vignettes/extra/socialmedia
BayesFactor/vignettes/extra/socialmedia/png
BayesFactor/vignettes/extra/socialmedia/png/48x48
BayesFactor/vignettes/extra/socialmedia/png/48x48/myspace.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/deviantart.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/linkedin.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/youtube.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/email.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/app_store.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/facebook.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/friendster.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/odnoklassniki.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/digg.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/pinterest.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/sharethis.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/google_play.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/bebo.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/vimeo.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/wordpress.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/reddit.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/skype.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/delicious.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/stumbleupon.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/apple.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/evernote.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/blogger.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/rss.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/addthis.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/hi5.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/vkontakte.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/orkut.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/twitter.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/livejournal.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/dribbble.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/android.png
BayesFactor/vignettes/extra/socialmedia/png/48x48/google_plus.png
BayesFactor/vignettes/extra/socialmedia/png/32x32
BayesFactor/vignettes/extra/socialmedia/png/32x32/myspace.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/deviantart.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/linkedin.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/youtube.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/email.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/app_store.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/facebook.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/friendster.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/odnoklassniki.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/digg.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/pinterest.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/sharethis.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/google_play.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/bebo.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/vimeo.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/wordpress.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/reddit.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/skype.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/delicious.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/stumbleupon.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/apple.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/evernote.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/blogger.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/rss.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/addthis.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/hi5.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/vkontakte.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/orkut.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/twitter.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/livejournal.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/dribbble.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/android.png
BayesFactor/vignettes/extra/socialmedia/png/32x32/google_plus.png
BayesFactor/vignettes/extra/socialmedia/readme.txt
BayesFactor/vignettes/extra/manual.css
BayesFactor/vignettes/index.Rmd
BayesFactor/vignettes/compare_lme4.Rmd
BayesFactor/vignettes/manual.Rmd
BayesFactor/vignettes/odds_probs.Rmd
BayesFactor/MD5
BayesFactor/build
BayesFactor/build/vignette.rds
BayesFactor/DESCRIPTION
BayesFactor/man
BayesFactor/man/extractProbabilities-methods.Rd BayesFactor/man/model.matrix-methods.Rd BayesFactor/man/options-BayesFactor.Rd BayesFactor/man/enumerateGeneralModels.Rd BayesFactor/man/compare-methods.Rd BayesFactor/man/priorLogodds-method.Rd BayesFactor/man/BFBayesFactorList-class.Rd BayesFactor/man/anovaBF.Rd BayesFactor/man/BFBayesFactor-class.Rd BayesFactor/man/meta.ttestBF.Rd BayesFactor/man/extractBF-methods.Rd BayesFactor/man/filterBF.Rd BayesFactor/man/linearReg.R2stat.Rd BayesFactor/man/posterior-methods.Rd BayesFactor/man/raceDolls.Rd BayesFactor/man/BFInfo.Rd BayesFactor/man/priorOdds-method.Rd BayesFactor/man/grapes-termin-grapes.Rd BayesFactor/man/newPriorOdds.Rd BayesFactor/man/regressionBF.Rd BayesFactor/man/BayesFactor-package.Rd BayesFactor/man/lmBF.Rd BayesFactor/man/ttestBF.Rd BayesFactor/man/plot.BFBayesFactor.Rd BayesFactor/man/nWayAOV.Rd BayesFactor/man/contingencyTableBF.Rd BayesFactor/man/grapes-same-grapes.Rd BayesFactor/man/generalTestBF.Rd BayesFactor/man/ttest.tstat.Rd BayesFactor/man/BFManual.Rd BayesFactor/man/recompute-methods.Rd BayesFactor/man/extractOdds-methods.Rd BayesFactor/man/puzzles.Rd BayesFactor/man/proportionBF.Rd BayesFactor/man/as.BFBayesFactor.Rd BayesFactor/man/model-classes.Rd BayesFactor/man/BFprobability-class.Rd BayesFactor/man/as.BFprobability.Rd BayesFactor/man/plot.BFBayesFactorTop.Rd BayesFactor/man/logMeanExpLogs.Rd BayesFactor/man/oneWayAOV.Fstat.Rd BayesFactor/man/BFodds-class.Rd
BayesFactor/.Rinstignore

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All documentation is copyright its authors; we didn't write any of that.