CalculateSCCellProportions | Calculate cell proportions based on single-cell data |
CorTri | Correlate columns of data frame |
CountsToCPM | Convert counts data in Expression Set to counts per million... |
EstimatePCACellTypeProportions | Estimate cell type proportions using first PC of expression... |
FilterUnexpressedGenes | Remove genes in Expression Set with zero expression in all... |
FilterZeroVarianceGenes | Remove genes in Expression Set with zero variance across... |
GenerateSCReference | Generate reference profile for cell types identified in... |
GetCTP | Return cell type proportions from bulk |
GetNumGenes | Get number of genes to use with no weighted information |
GetNumGenesWeighted | Get number of genes to use with weighted PCA |
GetOverlappingGenes | Find overlapping genes in single-cell data, bulk data, and... |
GetOverlappingSamples | Find overlapping samples in single-cell and bulk data |
GetUniqueMarkers | Get unique markers present in only 1 cell type |
MarkerBasedDecomposition | Performs marker-based decomposition of bulk expression using... |
ReferenceBasedDecomposition | Performs reference-based decomposition of bulk expression... |
SemisupervisedTransformBulk | Transforms bulk expression of a gene using only single-cell... |
SeuratToExpressionSet | Converts Seurat object to Expression Set |
SimulateBarcode | Simulate barcode for decomposition illustration |
SimulateData | Simulate data for decomposition illustration |
SupervisedTransformBulk | Transforms bulk expression of a gene given overlapping data |
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