GenerateSCReference: Generate reference profile for cell types identified in...
In BisqueRNA: Decomposition of Bulk Expression with Single-Cell Sequencing
Description
Usage
Arguments
Value
View source: R/reference_based.R
Description
Averages expression within each cell type across all samples to use as
reference profile.
Usage
1
GenerateSCReference(sc.eset, cell.types)
Arguments
sc.eset
Expression Set with single-cell data
cell.types
A character string. Name of phenoData attribute in sc.eset
that indicates cell type
Value
sc.ref Matrix. Reference profile with number of gene rows by number
of cell types columns.
BisqueRNA documentation built on May 24, 2021, 1:06 a.m.
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Description Usage Arguments Value
View source: R/reference_based.R
Description
Averages expression within each cell type across all samples to use as reference profile.
Usage
1 | GenerateSCReference(sc.eset, cell.types)
|
Arguments
sc.eset |
Expression Set with single-cell data |
cell.types |
A character string. Name of phenoData attribute in sc.eset that indicates cell type |
Value
sc.ref Matrix. Reference profile with number of gene rows by number of cell types columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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