GenerateSCReference: Generate reference profile for cell types identified in...

Description Usage Arguments Value

View source: R/reference_based.R

Description

Averages expression within each cell type across all samples to use as reference profile.

Usage

1
GenerateSCReference(sc.eset, cell.types)

Arguments

sc.eset

Expression Set with single-cell data

cell.types

A character string. Name of phenoData attribute in sc.eset that indicates cell type

Value

sc.ref Matrix. Reference profile with number of gene rows by number of cell types columns.


BisqueRNA documentation built on March 26, 2020, 7:48 p.m.